Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30794
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.7  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   6.2  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.2  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.1  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 283 CKILNMQFFFFVSQTKIYTL*GSNV 209
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 411 HLGST--WRPKISKRSTTKHKNGL 346
           H GST  W    + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 283 CKILNMQFFFFVSQTKIYTL*GSNV 209
           CK++  QFF  + +T  YTL  +NV
Sbjct: 278 CKVIVYQFFLRIPETDTYTLVVNNV 302


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 LDP*SVYIFVWLTKKKNCIFS 275
           LDP   YIFV  T   NC+F+
Sbjct: 102 LDPSGHYIFVTTTAGDNCLFT 122


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 286  NCKILNMQFFFFVSQTKIYTL*GSNV 209
            NCK +  QFFF V  T  Y L   NV
Sbjct: 1092 NCKAIVYQFFFRVPYTDTYELNVYNV 1117


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 143 TYSTVINNINKYQQRYKIAFRKNIRSLK 226
           +YS  + N+  Y QR ++A   N+  LK
Sbjct: 172 SYSPALKNVLNYSQRERVANLANVSILK 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,922
Number of Sequences: 5004
Number of extensions: 38050
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)