Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30794
(584 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05) 32 0.30
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 31 0.52
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7) 29 3.7
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6) 28 4.9
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92) 28 4.9
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 6.4
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4) 28 6.4
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95) 27 8.5
>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
Length = 322
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 236 NIYTLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 111
N YT+ I C+Y + C V +YL++ L + +ECE H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 31.5 bits (68), Expect = 0.52
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -2
Query: 274 LNMQFFFFVSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTC 107
L++ FFF + T I T +V +GY ++ L + +Y ++YY G S +E +
Sbjct: 350 LDVIFFFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVL 406
Query: 106 AREHRRDTPPTSAPHTRTCTPR 41
HRR+ + H +C PR
Sbjct: 407 CSIHRRNVYVSLYIHLLSCAPR 428
>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
Length = 488
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 137 ECERVRRMHVRARAPPRHAPHLR 69
+CE V R H+ R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445
>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
Length = 555
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 396 WRPKISKRSTTKHKNGLYRFFVENVTFYTLAVDDERKTVK 277
+ P K T KH GL+ + ++T + DER+ V+
Sbjct: 174 YEPAAMKAFTQKHSPGLFEMLLSSITREDSRLSDERQAVQ 213
>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 405
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 152 WSMYRECERVRRMHVRARAPPRHAP 78
WSM+ EC + R+ V +R PP +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170
>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
Length = 806
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 121 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 23
V + + ++RR +P + +PH+ T TP +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685
>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 152 WSMYRECERVRRMHVRARAPPRHAP 78
WSM+ EC + R+ V +R PP +P
Sbjct: 12 WSMFNECFPLIRVKVSSRDPPYMSP 36
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 152 TVINNINKYQQRYKIAFRKNIRSLKCI 232
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 387 KISKRS-TTKHKNGLYRFFVENVTFYTLAVDDER-KTVK 277
KIS +S T KHK L R ++ FYT D + KT+K
Sbjct: 34 KISTKSKTAKHKKDLSRLQKKDPEFYTFLQDKSKSKTIK 72
>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
Length = 263
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 152 TVINNINKYQQRYKIAFRKNIRSLKCI 232
T++ + N+Y Q Y+ F SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205
>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
Length = 221
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 155 VINNINKYQQRYKIAFRKNIRSLKCI 232
++ + N+Y+Q Y+ F SLKCI
Sbjct: 1 MVTSENEYEQEYRARFEIKTNSLKCI 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,001,228
Number of Sequences: 59808
Number of extensions: 299324
Number of successful extensions: 897
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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