Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30793
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   3.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   3.0  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   5.3  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.3  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 656 HSIGIACYKKYHLILMVLSCTKYFYYPDTWVGISSS 763
           HS  ++ +  YH +++ +SC   F+Y + W  +  S
Sbjct: 610 HS-NVSLHLFYHYLIVKVSCPIMFFYLNNWYSVKPS 644


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 163 HCTGERSDVHVTSAILLSELSNVFSVLMEFFGEM 62
           H   +++ VHV     + E SNV+S+L   +G +
Sbjct: 569 HQLAKKNSVHVPELYSVEEHSNVYSLLSNIYGRI 602


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 181 DSWMFGHCTGERSDVH-VTSAILLS 110
           D W F  C G++ DV  +T A ++S
Sbjct: 9   DQWKFAQCFGDKGDVEDITEADIIS 33


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 90  LKTFDNSLNKI-ADVTCTSERSPVQC 164
           L T D +++++ A VTCT +R  ++C
Sbjct: 99  LSTVDKAISRVHAIVTCTQDRMIIEC 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,910
Number of Sequences: 5004
Number of extensions: 52058
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)