Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30792
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 192 2e-50
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 91 1e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 1e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 84 1e-17
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 71 9e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 7e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 47 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 4e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 3e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.0
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 6.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 8.0
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 192 bits (469), Expect = 2e-50
Identities = 87/96 (90%), Positives = 93/96 (96%)
Frame = -1
Query: 570 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 391
NSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSV
Sbjct: 280 NSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSV 339
Query: 390 WIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
WIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 340 WIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 91.1 bits (216), Expect = 1e-19
Identities = 44/101 (43%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Frame = -1
Query: 570 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERK 400
N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER
Sbjct: 333 NCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERS 391
Query: 399 YSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 286
Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 90.6 bits (215), Expect = 1e-19
Identities = 41/95 (43%), Positives = 66/95 (69%)
Frame = -1
Query: 567 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVW 388
SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W
Sbjct: 286 SILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAW 345
Query: 387 IGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 283
+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 346 LGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 84.2 bits (199), Expect = 1e-17
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Frame = -1
Query: 567 SIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYS 394
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 393 VWIGGSILASLSTFQQMWISKEEYDESG 310
VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 71.3 bits (167), Expect = 9e-14
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 12/99 (12%)
Frame = -1
Query: 570 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIK 424
++I DVDIRK LY V+SGG++MY G+ R++KEI L P+ + K+K
Sbjct: 280 DTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVK 339
Query: 423 IIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 310
I P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 340 IEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.4 bits (135), Expect = 7e-10
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 14/107 (13%)
Frame = -1
Query: 570 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI-------------- 433
N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 313 NVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGV 372
Query: 432 KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 292
+ +I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 373 DVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/86 (24%), Positives = 44/86 (51%)
Frame = -1
Query: 564 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 385
+ + ++ ++ L +N +++GG PG+ R+++E+T++ P I + W
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682
Query: 384 GGSILASLSTFQQMWISKEEYDESGP 307
G S + F+ +++EEY E GP
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.0 bits (104), Expect = 4e-06
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = -1
Query: 546 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 367
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S +
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM- 372
Query: 366 SLSTFQQMWISKEEYDESGPGIVHRK 289
L + I++ EY E G I+ RK
Sbjct: 373 PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 537 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 367
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 366 SLSTFQQMWISKEEYDESGPGIVHRK 289
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 390 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 289
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 465 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 355
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 227 ELGRAQHHTAPGSRGRAA*KHLRWT 301
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 439 DHQDQDHRSPREEVLRMDRWIHPG 368
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.0
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 236 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 69
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,964
Number of Sequences: 5004
Number of extensions: 34999
Number of successful extensions: 96
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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