Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30792
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             163   1e-42
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.10 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.18 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.2  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  163 bits (396), Expect = 1e-42
 Identities = 76/79 (96%), Positives = 79/79 (100%)
 Frame = -1

Query: 570 NSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 391
           NSIMKCDVDIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSV
Sbjct: 55  NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSV 114

Query: 390 WIGGSILASLSTFQQMWIS 334
           WIGGSILASLSTFQQMWIS
Sbjct: 115 WIGGSILASLSTFQQMWIS 133


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 529 VRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 389
           +++H H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 138 LQRHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -1

Query: 579 PCTNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERK 400
           P  N  +K D DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K
Sbjct: 339 PKNNKELKYD-DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK 395

Query: 399 YSVWI 385
             +WI
Sbjct: 396 --IWI 398


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 160 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVVFL 330
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,570
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)