Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30790
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    31   0.15 
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   1.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   4.4  

>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -1

Query: 311 KQNIILAFGKKNDKIESHHSEVLYNVVFSLLFSILPRKIGATSSSSRAVAIKANSIYPCS 132
           K N  +A+     K+ +    V +N+ F+   S+LP  +  +     A A  A+   PCS
Sbjct: 332 KSNGGVAYCYNAQKLNNATGPVTFNMPFA---SVLPLAVSVSCDLGTASAYVASLPQPCS 388

Query: 131 QH*HVRSEY---PSHSHTRYVY 75
           Q  H+  +Y     HS  R  Y
Sbjct: 389 QKRHLEEDYSCLTEHSAKRRSY 410


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 268 ILSFFLPNAKIMFCFTGKYRHQDVTSSRMNRVTV 369
           ++ FFLP+ K++     +YR++ +  S +N  T+
Sbjct: 452 VIPFFLPSDKLIMLVESEYRNKHIFYSLLNSFTM 485


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 328 DDIFQ*SKTLFWHLAKKMIKLSLIIQKFFIMW 233
           D I+  +KTL W LA + I + LI + +  +W
Sbjct: 376 DQIYDSTKTLTWALASQWIGVYLIPKAWSDLW 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,456
Number of Sequences: 5004
Number of extensions: 43528
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)