Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30790
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  29   2.0  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.6  
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 28   4.5  
SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   4.5  

>SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 283 KKMIKLSLIIQKFFIMWYSPYCSLFYHVR*ELLPHL 176
           +K IK++ +I   F+M Y PY  +F  +  +++P L
Sbjct: 244 RKFIKMTFMIMVLFVMCYLPYQIVFLLIHFDVVPGL 279


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 287 GKKNDKIESHHSEVLYNVVFSLLFSILPRKIGATSSSSRAVAI 159
           GK +  IE H  +   N+      +  PR+  +TSS+S AVA+
Sbjct: 283 GKNSANIEYHCDKETTNITMETTNAHAPRRTPSTSSTSSAVAL 325


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 122  HVRSEYPSHSHTRYVYTDLKLALFCL 45
            H+ S  P HS TR    DL +AL CL
Sbjct: 945  HIPSS-PKHSRTRETTADLNIALLCL 969


>SB_57690| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 364

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 130 NTSTLDPSTRPIHILVTYTPTLS*LCFVSFS 38
           N+S+L+ STRP  +L T    LS +C +S +
Sbjct: 2   NSSSLEVSTRPYALLYTEAIFLSFICLISLT 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,504
Number of Sequences: 59808
Number of extensions: 301748
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)