Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30790
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical ...    29   1.7  
AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    28   5.3  
L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protei...    27   7.0  
L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protei...    27   7.0  

>AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical
           protein Y57A10C.9 protein.
          Length = 247

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -1

Query: 323 YFPVKQNIILAFGKKNDKIESHHSEVLYNVVFSLLFSILPRKIGATSSSSRAVAI--KAN 150
           + P K    L +   ++ I      ++   VF+ +  I  RKIGAT+SSS++ ++  +AN
Sbjct: 93  FLPAKYKKFLLYVSYSNTIAGFLIVIMSMFVFAGIRKISARKIGATTSSSKSSSVFRQAN 152

Query: 149 SI 144
            I
Sbjct: 153 RI 154


>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -1

Query: 431 QVLYGRDAFILN*YERAYFVCTVTLFILELVTS**RYFPVKQNIILAFGKKNDKIESHHS 252
           Q L G D  I   +   Y V    L ++  V S   Y P+  ++     +KN    S   
Sbjct: 169 QCLLGEDMRIFTVFSNVYTVLITALNVVTSVLSPFIYIPIMMDL-----RKNRDSHSQQQ 223

Query: 251 EVLYNVVFSLLFSIL 207
           + L+N +F   F +L
Sbjct: 224 KYLHNYIFFQSFLLL 238


>L23648-3|AAN63386.1|  438|Caenorhabditis elegans Cyclin t protein
           1.1, isoform b protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 137 CSQH*HVRSEYPSHSHTRYVYTDLKLALFCLFL*HNEKVIPR 12
           C  H H+   Y  HS  +Y Y D+  A  C+FL    +  PR
Sbjct: 76  CVAHTHMHRFYYLHSFKKYDYRDVGAA--CVFLAGKSQECPR 115


>L23648-1|AAA28034.1|  468|Caenorhabditis elegans Cyclin t protein
           1.1, isoform a protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 137 CSQH*HVRSEYPSHSHTRYVYTDLKLALFCLFL*HNEKVIPR 12
           C  H H+   Y  HS  +Y Y D+  A  C+FL    +  PR
Sbjct: 76  CVAHTHMHRFYYLHSFKKYDYRDVGAA--CVFLAGKSQECPR 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,072
Number of Sequences: 27780
Number of extensions: 235440
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)