Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30790
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26030.1 68417.m03748 hypothetical protein                          27   6.5  
At2g20230.1 68415.m02364 expressed protein                             27   6.5  

>At4g26030.1 68417.m03748 hypothetical protein 
          Length = 220

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 143 YPCSQH*HVRSEYPSHSHTRYVY 75
           Y C QH  + S  P H H +YV+
Sbjct: 93  YACRQHLDIFSSSPKHYHEQYVH 115


>At2g20230.1 68415.m02364 expressed protein
          Length = 270

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 495 LARHCC*HVTKSCRLKIAAYVTSFIRTGCVHTKLI*KSIFRMHSHSVH 352
           + R+CC HV+ +  LKI  +V +FI        +I  SI+ +H +S H
Sbjct: 1   MRRNCC-HVSFASTLKILNFVQAFI-----GVSIIIYSIWMLHEYSRH 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,081,693
Number of Sequences: 28952
Number of extensions: 206017
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)