Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30788
(755 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 30 1.4
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 30 1.9
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic... 29 3.3
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic... 29 3.3
At5g23910.1 68418.m02808 kinesin motor protein-related 29 4.4
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 29 4.4
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 29 4.4
At5g55540.1 68418.m06919 expressed protein 28 5.8
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME... 28 5.8
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 5.8
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.8
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 7.7
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 7.7
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 526 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 380
S+ W +PVD VEM+ L V+ S S W +WP+ ++ R
Sbjct: 293 SLGGW-EPVDAVAAVEMIKNQLADVKAFASKSKNGWS-YEWPLAVDEER 339
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 34 YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 198
YDR ++ D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 477
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 28 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 192
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257
>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
to transcriptional adaptor ADA2a [Arabidopsis thaliana]
gi|13591698|gb|AAK31319
Length = 548
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 28 FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 192
+N R E EHD D + + DA E Q L VLR +SKR + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 258 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 389
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 554 ITDLTAPLIDPLKPKSLKGIEYEPDNK 634
+TDL +PL+ P++P ++ Y PD +
Sbjct: 1042 VTDLLSPLLSPIRPAIVRRQVYFPDRR 1068
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 526 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 380
S+ W +PVD + VEM+ L V+ S W +WP+ + R
Sbjct: 290 SIGSW-EPVDAAAAVEMIKNQLADVKAFASKCKNGWS-KEWPLAADEER 336
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 231 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 133
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (METII)
nearly identical to cytosine-5 methyltransferase (METII)
[Arabidopsis thaliana] GI:6523846
Length = 1519
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = -2
Query: 592 LKGVDEGCGKVGDGVGPVL*VESVARWVQPVDGSQP----VEMVL---PCLVGVEGINST 434
L+ + E CG V D V V E A+ + + P V+ + PC G G+N
Sbjct: 1134 LRAIMEKCGDVDDCVSTVEAAELAAKLDENQKSTLPLPGQVDFINGGPPCQ-GFSGMNRF 1192
Query: 433 SHASWHVVDWPVII 392
SH SW V +I+
Sbjct: 1193 SHGSWSKVQCEMIL 1206
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +2
Query: 101 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 280
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 281 AAAERITVPGYRYLPVHREI 340
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 448 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 326
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 297 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 410
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 323 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 412
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,603,817
Number of Sequences: 28952
Number of extensions: 363851
Number of successful extensions: 1040
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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