Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30787
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   8.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   8.9  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   8.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   8.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   8.9  

>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 230 YATPLMSPYNARLESSSTGSSFPADSP 150
           Y  P+ SPY++    SST SSF   SP
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP 157


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 53  PRHLISDAHEWINEIPTVPIYYLAKPQP 136
           P  LI+D  + I ++PT PIY +A   P
Sbjct: 303 PASLINDLLD-IKKVPTKPIYDMASEYP 329


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 439 PPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 347
           P   ++E D A          H+T LH WNE
Sbjct: 876 PKDKIMEADKARANFTQPGGDHLTLLHIWNE 906


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 89  NEIPTVPIYYLAKPQP 136
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 227 ATPLMSPYNARLESSSTGSSFPADSPK 147
           +T    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,221
Number of Sequences: 5004
Number of extensions: 43364
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)