Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30787
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.46
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 0.61
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 1.9
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 29 1.9
At2g34810.1 68415.m04274 FAD-binding domain-containing protein s... 29 2.5
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 4.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 4.3
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 5.7
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 5.7
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 5.7
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 5.7
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 5.7
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 7.5
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 9.9
At3g62370.1 68416.m07006 expressed protein 27 9.9
At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620... 27 9.9
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 27 9.9
At1g15030.1 68414.m01796 expressed protein 27 9.9
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.46
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 357 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 211
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 0.61
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 487 DTCVIL*QMYRPSQTSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 347
+ C L + + P+Q PP S +E + + LNGD VT ++ N+
Sbjct: 662 EVCESLCEDFDPTQIFPPSSEVETEQSDTLNGDFANNLVTRSYSSNQ 708
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 227 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 117
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 464 DVPPQSNFPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRP 300
+VPPQ P W RT ++ RR P AR E PP +++ RP
Sbjct: 16 EVPPQ---PVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGASSDTSRP 67
>At2g34810.1 68415.m04274 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 540
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 494 ALGHLRYSLTDVPPQSNFPAWQCPRTGSRGSF 399
+LG L Y++ FPA CP+ G+ G F
Sbjct: 156 SLGQLYYNIASKSKVHAFPAGVCPKVGAGGHF 187
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 321 DRAPLPPNRVSNETMKVVVFQRRSRET 241
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 372 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 235
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 312 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 202
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 312 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 202
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 239 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 132
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 360 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 265
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 41 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 172
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 396 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 271
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 236 PTYATPLMSPYNARLESSSTGSSFPADSPKPVP 138
P P SP + R S GSS + SP P+P
Sbjct: 40 PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 418 PDHAGVLNGDERFRHVTTLHAWN 350
P G NG +RF H+ ++AWN
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWN 193
>At3g19810.1 68416.m02509 expressed protein contains Pfam PF02620:
Uncharacterized ACR, COG1399
Length = 321
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 459 TAPVKLPRLAVSSNRITREF*TATS 385
T P+KLPRLA S +++E T TS
Sbjct: 55 TEPIKLPRLAKSRILVSQESFTETS 79
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -2
Query: 233 TYATPLMSPYNARLESSSTGSS--FPADSP 150
T+ P +SP + + SSSTG S FP +P
Sbjct: 433 TFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462
>At1g15030.1 68414.m01796 expressed protein
Length = 360
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = +2
Query: 41 GSQMPRHLISDA-----HEWINEI-PTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 199
GS + +H +S+A +++ + P+VP +YL+K RER + + L VW
Sbjct: 33 GSALLKHHVSEASSSNVERFLDSVTPSVPAHYLSKTIVRERGGSDVESQVPYFLLGDVW 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,624
Number of Sequences: 28952
Number of extensions: 249347
Number of successful extensions: 717
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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