Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30785
         (739 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BLM6 Cluster: Chromosome undetermined scaffold_114, w...    34   3.2  
UniRef50_Q17851 Cluster: Uncharacterized protein C09B9.3; n=1; C...    34   3.2  
UniRef50_Q23J51 Cluster: Putative uncharacterized protein; n=1; ...    33   5.5  
UniRef50_Q1EZI6 Cluster: ATP-binding region, ATPase-like:Histidi...    33   9.7  

>UniRef50_A0BLM6 Cluster: Chromosome undetermined scaffold_114,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_114,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 221

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = -1

Query: 505 WWYFSFIRHNEIVNICDVIDMILVFSSDKYILENLHKLTNKKELLPKKNNTAFLQIL 335
           +++ S ++ N IV I D +  ILV      IL+ LH LTN  + L K NN  +L  L
Sbjct: 124 YYHLSKLKRNRIV-IMDNLQQILVHQ----ILKPLHNLTNLNQFLQKTNNQLYLCFL 175


>UniRef50_Q17851 Cluster: Uncharacterized protein C09B9.3; n=1;
           Caenorhabditis elegans|Rep: Uncharacterized protein
           C09B9.3 - Caenorhabditis elegans
          Length = 884

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 143 QTKKQFHAKIKKFTNFSTYITTVIYDFFYTKYKRQLNNIQTN 18
           + KK F + I+ F NF   I T +  FF T   ++ NN+ TN
Sbjct: 56  ERKKIFRSNIEHFINFEPSILTFMLSFFVTTIVQRWNNVFTN 97


>UniRef50_Q23J51 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 4302

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +3

Query: 45   FVFGIKKIIYNCSYVCREVCELLYFCMKLF 134
            F+FG ++I+ +CS  C EVC+   FC+K F
Sbjct: 1168 FLFGQQRILQSCSQFC-EVCDDTGFCLKCF 1196


>UniRef50_Q1EZI6 Cluster: ATP-binding region, ATPase-like:Histidine
           kinase, HAMP region:Histidine kinase A-like precursor;
           n=1; Clostridium oremlandii OhILAs|Rep: ATP-binding
           region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like precursor - Clostridium
           oremlandii OhILAs
          Length = 437

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = -1

Query: 487 IRHNEIVNICDVIDMILVFSSDKYILENLHKLTNKKELLPKKNNTAFLQILSQRAP 320
           +R    + + D+I M   F  D  ++E++HK+   +E L K  N+  + + S++ P
Sbjct: 53  LRQKTDLPLADIIKMASNFMHDVSVIEDIHKIQISEEELEKVQNSEIVFLSSKKIP 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,068,315
Number of Sequences: 1657284
Number of extensions: 11553590
Number of successful extensions: 28070
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28054
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)