Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30785
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.1  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   4.9  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   6.4  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   8.5  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -1

Query: 556 NLLQLQPRTTSL*SFFVWWYFSFIRHNEIVNICDVIDMILVFSSDKYILEN--LHKLTNK 383
           NL  L+ R   + S F W + S    + I++ CD+ D+  V    K +L++  L++  + 
Sbjct: 187 NLSSLEIRGYDIRSIFGWDFLSTTLKSLILHHCDLADLSEVLI--KLVLDDAELYRFRSS 244

Query: 382 KELLPKKNNT 353
           ++  P++ N+
Sbjct: 245 RQTYPQQPNS 254


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 SEEMLYCFFLEATLSYLLVYANFQEY 417
           +E ++ CF L  T+ Y++ Y NF+ Y
Sbjct: 335 TEPIVVCFTLYLTVVYIINYINFEGY 360


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -3

Query: 134 KQFHAKIKKFTNFSTYITTVIYDFFYTKYKRQLNNIQ 24
           K+F  + K+  ++ T+ T   ++ F+ +YK +++ IQ
Sbjct: 5   KKFSIRKKRECSYPTFRTLYEFNKFFLRYKTEISKIQ 41


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 76  TVVMYVEKFVNFFIFA*NCFLVWFFL 153
           ++V  +EK VNFF  A N FL ++F+
Sbjct: 598 SLVFAIEKLVNFFSMA-NFFLAFYFV 622


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 484 RHNEIVNICDVIDMILVFSSDKYILENLHKLTNKKEL---LPKKN 359
           +  E V+  D+I  I +   D+Y++ NL +  N+KEL   L KKN
Sbjct: 212 KRTEGVSTSDLITRI-IRDYDQYVMRNLARGVNRKELNVSLFKKN 255


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 5   KLRGSWFGCC*VVFCIWYKK 64
           KL GS  G C   +CIWY K
Sbjct: 362 KLYGSGSGDCPEGYCIWYLK 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,699
Number of Sequences: 5004
Number of extensions: 56957
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)