Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30785
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical pr...    34   0.091
AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine re...    30   2.0  
AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine re...    28   7.9  

>U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical
           protein C09B9.3 protein.
          Length = 884

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 143 QTKKQFHAKIKKFTNFSTYITTVIYDFFYTKYKRQLNNIQTN 18
           + KK F + I+ F NF   I T +  FF T   ++ NN+ TN
Sbjct: 56  ERKKIFRSNIEHFINFEPSILTFMLSFFVTTIVQRWNNVFTN 97


>AC024779-2|AAK68485.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform a protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 502 WYFSFIRHNEIVNICDVIDMILV--FSSDKYILENLHKLTNKKELLPKKNNTAFLQILSQ 329
           WY  F+++N IV    +ID+I V    S K  ++N  KL+       +K  +A +  L Q
Sbjct: 149 WYADFLKYNSIVISIVIIDVITVSKVRSYKAGVKNNFKLSKTTSQSHEKKRSAEMNFLKQ 208


>AC024779-1|AAP86615.1|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein50, isoform b protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 502 WYFSFIRHNEIVNICDVIDMILVFSSDKYILENLHKLTNKKELLPKKNNTAFLQILSQ 329
           WY  F+++N IV    +ID+I V     Y    L K T++     +K  +A +  L Q
Sbjct: 160 WYADFLKYNSIVISIVIIDVITVSKVRSY-KAGLSKTTSQSH---EKKRSAEMNFLKQ 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,907
Number of Sequences: 27780
Number of extensions: 303496
Number of successful extensions: 708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)