Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30784
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    37   0.36 
UniRef50_P05512 Cluster: Maturase-like RF3 protein; n=2; Sacchar...    35   1.9  
UniRef50_P12294 Cluster: Endonuclease SceI small subunit; n=1; S...    35   1.9  
UniRef50_Q940X9 Cluster: AT5g21160/T10F18_190; n=3; core eudicot...    34   2.6  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -1

Query: 496  NGRQRLGSAPGIADAHGR 443
            +GRQRLGSAPGIA+ HGR
Sbjct: 968  SGRQRLGSAPGIAEVHGR 985


>UniRef50_P05512 Cluster: Maturase-like RF3 protein; n=2;
           Saccharomyces|Rep: Maturase-like RF3 protein -
           Saccharomyces bayanus (Yeast) (Saccharomyces uvarum)
          Length = 476

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 635 NSFKIGNQPYYYHNKHLN*IHNAR 564
           N+ KI N  YYY+NK++N +HNAR
Sbjct: 447 NNIKIDNYDYYYYNKYIN-MHNAR 469


>UniRef50_P12294 Cluster: Endonuclease SceI small subunit; n=1;
           Saccharomyces cerevisiae|Rep: Endonuclease SceI small
           subunit - Saccharomyces cerevisiae (Baker's yeast)
          Length = 559

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 635 NSFKIGNQPYYYHNKHLN*IHNAR 564
           N+ KI N  YYY+NK++N +HNAR
Sbjct: 530 NNIKIDNYDYYYYNKYIN-MHNAR 552


>UniRef50_Q940X9 Cluster: AT5g21160/T10F18_190; n=3; core
           eudicotyledons|Rep: AT5g21160/T10F18_190 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 826

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 501 SKTVGSG-LALPLALLMPTGDGNYSSGAPYTHPTEHCSEACHSERVNNFKSSNLL**FIK 325
           ++T+G G    P ++      GN S G+     ++  SE   S R NN+KS NL     +
Sbjct: 368 AETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSADE 427

Query: 324 KRNGCEDL 301
           KRN  EDL
Sbjct: 428 KRN-VEDL 434


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,025,629
Number of Sequences: 1657284
Number of extensions: 10424831
Number of successful extensions: 19726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19723
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)