Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30784
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.9  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   6.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 10  VLPILILST*DTKNSSRLFEMSI 78
           ++PI+I  T D +NS+ +F +++
Sbjct: 88  MVPIVIFKTKDMRNSTNIFLVNL 110


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 10  VLPILILST*DTKNSSRLFEMSI 78
           ++PI+I  T D +NS+ +F +++
Sbjct: 88  MVPIVIFKTKDMRNSTNIFLVNL 110


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 576 YLV*VFIMVIIWLITYFEGIRFS 644
           YL+ +F+ V  W+I       F+
Sbjct: 96  YLIFIFVNVFFWVIILMSNYAFT 118


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 105 HGGPWTSHPY*HFEQ 61
           H G W   P  HFEQ
Sbjct: 72  HHGQWNYSPDNHFEQ 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,427
Number of Sequences: 336
Number of extensions: 2855
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)