Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30784
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g21160.1 68418.m02528 La domain-containing protein / proline-...    34   0.071

>At5g21160.1 68418.m02528 La domain-containing protein /
           proline-rich family protein contains proline-rich
           extensin domains, INTERPRO:IPR002965, PF05383: La domain
          Length = 826

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 501 SKTVGSG-LALPLALLMPTGDGNYSSGAPYTHPTEHCSEACHSERVNNFKSSNLL**FIK 325
           ++T+G G    P ++      GN S G+     ++  SE   S R NN+KS NL     +
Sbjct: 368 AETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSADE 427

Query: 324 KRNGCEDL 301
           KRN  EDL
Sbjct: 428 KRN-VEDL 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,058,409
Number of Sequences: 28952
Number of extensions: 225566
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)