Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30780
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 34 0.082
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 31 0.58
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 31 1.0
At3g24120.2 68416.m03029 myb family transcription factor contain... 30 1.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.3
At1g68150.1 68414.m07785 WRKY family transcription factor simila... 29 2.3
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 29 3.1
At3g22810.1 68416.m02875 expressed protein ; expression support... 29 4.1
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 28 5.4
At5g65220.1 68418.m08205 ribosomal protein L29 family protein co... 28 7.2
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 28 7.2
At4g04730.1 68417.m00694 hypothetical protein 28 7.2
At1g52080.1 68414.m05875 actin binding protein family contains P... 28 7.2
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 28 7.2
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 9.5
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c... 27 9.5
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 9.5
At4g22940.1 68417.m03312 protein kinase family protein contains ... 27 9.5
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 27 9.5
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 34.3 bits (75), Expect = 0.082
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 214 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLM--YAYTEVKRRLDYQLEK 387
L++ E EK Q A+ + L +AK+E +EAAY+ RL+ + E +++ + +L K
Sbjct: 671 LKERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSK 730
Query: 388 SNVERRLAQKHMVDWIVSN 444
E L +K+ + ++ N
Sbjct: 731 ERHESDLKEKNRLSRMLGN 749
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 216 GGRN*GR--EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHV 341
GGR GR D G G P G G R PA RG ++G + V
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMKGGSKV 80
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 GQEGERAPAARGRLQGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQG-D 458
G G R RGR G R + G + +RG S R + HGR R +G
Sbjct: 5 GYRGGRGDG-RGRGGGGDRGRGYSGRGDGRGRGGDGDRGYSGRGDGHGRGGGGDRGRGYS 63
Query: 459 HSGPGEAGAGPLHRGPGFAGQ 521
G G G RG G++G+
Sbjct: 64 GRGDGRGRGGGGDRGRGYSGR 84
>At3g24120.2 68416.m03029 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +1
Query: 190 GRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYTEVKRRL 369
G+ T + + + GE + + + + +++N Q+ A R ++ EV+RRL
Sbjct: 100 GKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQM-----EVQRRL 154
Query: 370 DYQLEKSNVERRL 408
QLE V+RRL
Sbjct: 155 HDQLEYGQVQRRL 167
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = +1
Query: 154 KEVEATENEWNEGRNQTVKALEDAIE--GEKTEQWRAQGQELLIQAKKENVLLQLEAAYR 327
++ E ++E ++ K LE+A E G++T Q + + +KE +Q+ Y
Sbjct: 1469 RKYEKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEK-RIQILDKYV 1527
Query: 328 ERL---MYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCI 498
+L + TE ++ D +L K ER+ +K + D + + D+E L+R
Sbjct: 1528 HQLKDEVRKKTEDLKKKDEELTKERSERKSVEKEVGDSLTKIKKEKTKVDEELAKLERYQ 1587
Query: 499 ADLASLARK 525
L L+ +
Sbjct: 1588 TALTHLSEE 1596
>At1g68150.1 68414.m07785 WRKY family transcription factor similar
to DNA-binding protein ABF2 GI:1159879 from [Avena
fatua]
Length = 374
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Frame = -1
Query: 651 KGRPVNCNTTHYRANWVPGPPSRLV-------LSILITLLYINNVRFRSLP-GQRSQVRD 496
KG P C +YR PG P R +SILIT LP G +
Sbjct: 249 KGNP--CPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTY--EGTHNHPLPVGATAMAST 304
Query: 495 AAVQRLLLLVRSDRLGHVAHY 433
A+ LLL SD L H ++Y
Sbjct: 305 ASTSPFLLLDSSDNLSHPSYY 325
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 390 ERGASSRPEAHGRLD-SEQRDQGDHSGPGEAGAG 488
E G SS E H +D +E + G HSGP +G G
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 214 LEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERLMYAYTEVKRR 366
+ED G +W A+G +LL + +K ++ ++ + Y RL ++K R
Sbjct: 340 VEDNFLGHCNREWLARGGQLLKRTRKGDLHWKIVSVYINRLNQVILKMKSR 390
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +1
Query: 142 AWLDKEV-EATENEWNEG-RNQTVKALEDAIEGEKTE--QWRAQGQELLIQAKKENVLLQ 309
AWLD EV EA E + +TV A +A+ + E + L + VLL
Sbjct: 38 AWLDGEVVEANGQEIKVNCQTKTVVAKVNAVHPKDPEFPELGVDDMTKLAYLHEPGVLLN 97
Query: 310 LEAAYRERLMYAYT 351
L+A Y +Y YT
Sbjct: 98 LKARYNANEIYTYT 111
>At5g65220.1 68418.m08205 ribosomal protein L29 family protein
contains Pfam profile PF00831: ribosomal protein L29
Length = 173
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 271 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQ 161
A VPA AT SS P+ ++S+ ++L+ IRS++ +
Sbjct: 40 ARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTE 76
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -3
Query: 268 PVPARATAPSSLPQLRPPVL-----SRFGSDLRSIRS-RSLQLPCPTKRPTL 131
P P + AP+ P+ P++ + F L +S R ++LP PTK PT+
Sbjct: 376 PTPTKPLAPAKPPRHVGPLMPTKPPTMFPKPLAPAKSPRHVELPMPTKPPTM 427
>At4g04730.1 68417.m00694 hypothetical protein
Length = 140
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 294 ERAPAARGRLQGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQG 455
E ++RG GE+H +H GE++ ++R SR H + ++EQR G
Sbjct: 81 EVGKSSRGAQDGESHNNMHLGESSKRKNLIILQRDKESR--QHKQQETEQRMGG 132
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 214 LEDAIEGEKTEQWRAQGQELLIQA-KKENVLLQLEAAYRERLMYAYTEVKRRLDYQLEKS 390
+E + K ++ +A+ ++L + + VLL+L+ A + + +K++L+ ++
Sbjct: 187 METKVFNFKIKKLQAENEKLKAECFEHSKVLLELDMAKSQVQV-----LKKKLNINTQQ- 240
Query: 391 NVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADLASLARK*TEAN 540
+V + L+ K V + KA+ PD E + + + DL S + T+ N
Sbjct: 241 HVAQILSLKQRVARLQEEEIKAVLPDLEADKMMQRLRDLESEINELTDTN 290
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 300 APAARGRLQGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEA 479
+P + G++QG+ + A L ++ + ++ HG+ S Q+ G G A
Sbjct: 108 SPRSSGQVQGQQFSNV---SANQLLAEQQRNKKMETQSFQHGQQQSMQQQFSTVRGGGLA 164
Query: 480 GAGPLHRGPG 509
G GP+ PG
Sbjct: 165 GVGPVKMEPG 174
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 208 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 306
+A IEG E+ QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415
>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
domain-containing protein contains Pfam profile PF02409:
O-methyltransferase N-terminus
Length = 344
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 447 HVAHYPVDHVLLGETTLHVRLLELVVQT 364
HV H P+ H+ GET H+R L +QT
Sbjct: 66 HVIHDPLAHLFAGET--HLRNLHTKIQT 91
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3
Query: 387 VERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGP 506
V+RG ++R G R +G G G GAGP RGP
Sbjct: 13 VKRGKTARSGGRGI----SRGRGRGRGGGGRGAGPARRGP 48
>At4g22940.1 68417.m03312 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 458
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 546 NNVRFRSLPGQRSQVRDAAVQRLLLLVRSDRLG 448
N RF +LP +R D A + LL SD+LG
Sbjct: 21 NRPRFHTLPSERRIANDQAQKVTELLKMSDKLG 53
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 27.5 bits (58), Expect = 9.5
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = +1
Query: 157 EVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAAYRERL 336
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A +
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKAVADA- 922
Query: 337 MYAYTEVKRRLDYQL-EKSNVERRLAQ-KHMVDWIVSNVTKA----ITPDQEKQALDR 492
+ V LD L KS +E L Q + + I+S +A T + E++ L +
Sbjct: 923 ----SSVASELDEVLATKSTLEAALMQAERNISDIISEKEEAQGRTATAEMEQEMLQK 976
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,576
Number of Sequences: 28952
Number of extensions: 302278
Number of successful extensions: 1099
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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