Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30779
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    44   2e-05
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    29   0.54 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    29   0.54 
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    29   0.54 
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    29   0.54 
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   2.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.7  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 53/117 (45%)
 Frame = +1

Query: 1   RICKVLKVNQENERLMEEYERLASDLLDWIRRTMPWLNSRQTDNSLAGCQKKLEDYRTYR 180
           R+ +  +V      +  +YE     LL  I R   + ++ Q +N+    +    ++  ++
Sbjct: 241 RVERFTEVLMSTHDMKIDYESRMKRLLGSIARMQEYWHTVQFENNYTDVKSHSNNFAKFK 300

Query: 181 RKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIAQAWKGLEIAEKA 351
              K   V++K  LE+   T+QT L+      Y P  G  + D+ + WK   ++E+A
Sbjct: 301 ATEKREWVKEKIDLESLLGTIQTNLKTYQLRKYEPPAGLKIVDLERQWKDF-LSEEA 356


>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 8   AKFSKSTRRTNA*WKSTNVLPVTSWTGSVAPCHG*TAVRPTTLLP---GAKKNWKTTVLT 178
           A+F +  + T+   K     P T     V+   G   + PTT +P   G +K  K  V+ 
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222

Query: 179 GVSTSHHV*NRRPNWRPTSTPFR 247
           G +    + +  P  RPT  P R
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLR 245


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 25  NQENERLMEEYERLASDLLDWIRRTMPWLNSRQTDNSLAGCQKKL 159
           +QENE L+E +ER+ S+ L  ++   P   S +       C+K++
Sbjct: 686 DQENEDLLESFERVISEELSLLKSNEPSDISLKKRKRRKNCEKRI 730


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 8   AKFSKSTRRTNA*WKSTNVLPVTSWTGSVAPCHG*TAVRPTTLLP---GAKKNWKTTVLT 178
           A+F +  + T+   K     P T     V+   G   + PTT +P   G +K  K  V+ 
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222

Query: 179 GVSTSHHV*NRRPNWRPTSTPFR 247
           G +    + +  P  RPT  P R
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLR 245


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = +2

Query: 8   AKFSKSTRRTNA*WKSTNVLPVTSWTGSVAPCHG*TAVRPTTLLP---GAKKNWKTTVLT 178
           A+F +  + T+   K     P T     V+   G   + PTT +P   G +K  K  V+ 
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222

Query: 179 GVSTSHHV*NRRPNWRPTSTPFR 247
           G +    + +  P  RPT  P R
Sbjct: 223 GKTLLEAIDSIEPPARPTDKPLR 245


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538 FESDLAAHQDRVEQNRGHRPG-TQHPRVPR 624
           F+SD   HQD   Q+R HR G T+  R+ R
Sbjct: 830 FDSDWNPHQDLQAQDRAHRIGQTKEVRIYR 859


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 538  FESDLAAHQDRVEQNRGHRPG-TQHPRVPR 624
            F++D   HQD   Q+R HR G T+  R+ R
Sbjct: 1281 FDTDWNPHQDLQAQDRAHRIGQTKEVRILR 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,459
Number of Sequences: 5004
Number of extensions: 56918
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)