Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30779
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 31 0.75
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259... 31 1.3
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961... 29 3.0
06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616... 29 4.0
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 5.3
04_04_1620 + 34839420-34840013 29 5.3
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 29 5.3
11_06_0137 + 20499524-20499829 28 7.0
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 28 7.0
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 28 7.0
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 28 7.0
10_08_0965 + 21915842-21916906 28 9.2
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 487 RQCKLNDIKALKKKHEAFESDLAAHQDRVEQNRGHRPGTQHPRVPRGG 630
RQ + + K LK+ A E DL D+++ P T HP P GG
Sbjct: 137 RQALVEEGKNLKEGLIALEEDLVQLTDKLQLEAQSIPNTTHPDAPVGG 184
>04_04_1086 -
30725010-30725138,30725748-30725786,30725876-30725998,
30726953-30727015,30727540-30727620,30727998-30728088,
30728295-30728366,30728452-30728552,30728681-30728779,
30729132-30729329,30730792-30730824,30731084-30731192,
30732088-30732149,30732388-30732468,30732549-30732704,
30732812-30732976,30733351-30733413,30733492-30733545,
30733574-30733612,30733727-30733783,30733862-30733930,
30734022-30734135,30734216-30734284,30734821-30734927,
30735207-30735363
Length = 776
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +1
Query: 13 VLKVNQENERLMEEYERLASDLLDWIRRTMPW-LNSRQTDNSLAGCQKKLEDYRTYRRKH 189
VLK N NE L ++ RL SDL D +++ + + + SL +KL+ +
Sbjct: 98 VLKANAHNEMLEKQVLRLGSDLEDQVKKGESLEARASEAEKSLLELTQKLDHAEKINMEQ 157
Query: 190 KPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEGKM 300
K ++E+ L + +Q KL R A + E M
Sbjct: 158 K-KKIEE---LNHSLRQVQDKLFEVEREAKLKAEELM 190
>03_06_0570 -
34794678-34795115,34795339-34795920,34796008-34796146,
34796261-34796402,34796504-34796621,34796713-34796820,
34796894-34796968,34797774-34798003,34798086-34798388,
34798949-34799130,34800288-34800371,34800799-34801391
Length = 997
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 142 GCQKKLEDYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYM 282
GC L R Y R+HK + KA NT+Q + +R +Y+
Sbjct: 156 GCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRKSYI 202
>06_01_0815 +
6166861-6166953,6167074-6167173,6168569-6168639,
6169873-6170064,6170168-6170290
Length = 192
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 472 QSQDFRQCKLNDIKALKKKHEAFESDLAAHQDRVEQNRGHRPGTQHPRVPRG 627
Q + F + +++A+++ + ES+L Q +V R + PG + PR RG
Sbjct: 120 QPKGFAYVEFLEVEAVQEAVKLNESELHGRQIKVAPKRTNVPGMKQPRGGRG 171
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 328 PSMLERCQKPSCLRWACTQDG 266
P+ + RC PSC +W C G
Sbjct: 172 PACVARCNVPSCRKWFCNSRG 192
>04_04_1620 + 34839420-34840013
Length = 197
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 50 KSTNVLPVTSWTGSVAPCHG*TAVRPTTLLPGAKKNWKTTVLTGVSTSH 196
K +LP +W + PC G +R A K W T + G SH
Sbjct: 36 KKEKILP--AWRANAIPCEGGEVLRRKKEAVAAGKLWSTPDIPGAMGSH 82
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 442 DW-TRGKEEMLQSQDFRQCKLNDIKALKKKHEAFESDL 552
DW TR EEM +++DF L + L ++E F DL
Sbjct: 61 DWATRSLEEMQRAEDFDSFCLMGLSPLDGRYERFTRDL 98
>11_06_0137 + 20499524-20499829
Length = 101
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +1
Query: 118 RQTDNSLAGCQKKLE-DYRTY---RRKHKPPRVEQK 213
+ T++S GC + ++ D RT+ R HKPP ++Q+
Sbjct: 63 KATEDSSNGCDESMKKDIRTHLRPRHTHKPPYIQQR 98
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 49 EEYERLASDLLDWIRRTMPWLNSRQTDNSLAGCQKKLEDYRTYRRKHKPPRVEQKAKLET 228
++ E LA L+ IR +PW + S C+KK+ PP +Q ++ T
Sbjct: 353 DDLESLAYTLIFLIRGRLPWQGYQGDTKSFLVCKKKMATSPEMLSCFCPPPFKQFLEVVT 412
Query: 229 N 231
N
Sbjct: 413 N 413
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 115 SRQTDNSLAGCQKKLEDYRTYRRKHKPPRVEQKAKLETNFNTLQTKLRLSNRPAYMPTEG 294
S D + C KK+ R+ R+H P+ E K+ +F QT L N G
Sbjct: 169 SSSVDYTYRHCLKKMRPRRSRSRQHH-PQEELLEKIREDFQAWQTSKALENARTVFTASG 227
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = -2
Query: 708 VPPALRERAEP---GPTASRCADNARSRSATSW--YSRVLSSWAMAAILLDTILV 559
VPP +RE A P P AS C AR R+ +W + ++ A + +LL+ + +
Sbjct: 87 VPPGMRESAAPVPDEPPASPCT-TARRRARAAWRKVASLVPRKARSVVLLNLVTI 140
>10_08_0965 + 21915842-21916906
Length = 354
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 708 VPPALRERAEPG---PTASRCADNARSRSATSWYSRVLSSWA 592
+P A ER +P PTAS + ++ R + W SR S W+
Sbjct: 257 LPAAQAERGQPSSVTPTASFSSARSQERWSNRWSSRWSSRWS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,766,439
Number of Sequences: 37544
Number of extensions: 458196
Number of successful extensions: 1484
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -