Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30779
(757 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 30 1.4
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At4g32190.1 68417.m04581 centromeric protein-related low similar... 30 1.9
At5g12960.1 68418.m01486 expressed protein 29 3.3
At5g12950.1 68418.m01485 expressed protein putative secreted pro... 29 3.3
At1g76900.2 68414.m08950 F-box family protein / tubby family pro... 28 5.8
At1g76900.1 68414.m08949 F-box family protein / tubby family pro... 28 5.8
At5g10080.1 68418.m01168 aspartyl protease family protein contai... 28 7.7
At2g06005.2 68415.m00656 expressed protein 28 7.7
At2g06005.1 68415.m00655 expressed protein 28 7.7
>At5g52950.1 68418.m06570 expressed protein ; expression supported by
MPSS
Length = 945
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 46 MEEYERLASDLLDWIRRTMPWLNSRQTDNSLAGCQKKLEDYRTYRRKHKPPRVEQKAKLE 225
M E R S W+ +QT NS K + RT +RK + VE E
Sbjct: 850 MRERARRFSSFTSWMPDLCRVWAPKQTKNSKG---KADQQQRTAKRKKEQRSVEYDRVCE 906
Query: 226 TNFNTLQTK-LRLSNRPAY 279
T T++TK +R N+ Y
Sbjct: 907 TPMTTIETKRIRTGNKDDY 925
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 208 QKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIA 315
Q+ LE+ L +LRL +P + T+GK V+D A
Sbjct: 246 QRRFLESQIEVLTNQLRLLEKPTTVDTKGKSVADTA 281
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 208 QKAKLETNFNTLQTKLRLSNRPAYMPTEGKMVSDIA 315
Q+ LE+ L +LRL +P + T+GK V+D A
Sbjct: 354 QRRFLESQIEVLTNQLRLLEKPTTVDTKGKSVADTA 389
>At4g32190.1 68417.m04581 centromeric protein-related low similarity
to SP|Q02224 Centromeric protein E (CENP-E protein)
{Homo sapiens}
Length = 783
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 640 TRVVSASARSGTGFGALTQGRRHALDDAERVLEQNRP 750
TRVV+ +S F ++T+ +RH L + VL RP
Sbjct: 25 TRVVNHKQKSLVAFPSITRRKRHLLLSVQSVLHNTRP 61
>At5g12960.1 68418.m01486 expressed protein
Length = 865
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 235 NTLQTKLRLSNRPAYMPTEGKMVSDIAQAWK 327
N++ K+ L+ RP +PT G +S I Q WK
Sbjct: 571 NSIGAKVSLNGRPLNVPTSGNFLS-IKQKWK 600
>At5g12950.1 68418.m01485 expressed protein putative secreted
protein SCF41.30c, Streptomyces coelicolor,
EMBL:SCF41_30
Length = 861
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 235 NTLQTKLRLSNRPAYMPTEGKMVSDIAQAWK 327
N++ K+ L+ RP +PT G +S I Q WK
Sbjct: 567 NSIGAKVSLNGRPLNVPTSGNFLS-IKQKWK 596
>At1g76900.2 68414.m08950 F-box family protein / tubby family
protein similar to Tubby protein (SP:P50586) {Mus
musculus}; similar to Chain A, C-Terminal Domain Of
Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
similar to Tubby related protein 1 (Tubby-like protein
1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile: PF01167: Tub family; contains Pfam
PF00646: F-box domain
Length = 455
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 220 VWPSVLHVVACAYACK 173
VWP+ HVVACA C+
Sbjct: 78 VWPARRHVVACASVCR 93
>At1g76900.1 68414.m08949 F-box family protein / tubby family
protein similar to Tubby protein (SP:P50586) {Mus
musculus}; similar to Chain A, C-Terminal Domain Of
Mouse Brain Tubby Protein (GI:6730158) [Mus musculus];
similar to Tubby related protein 1 (Tubby-like protein
1) (Swiss-Prot:O00294) [Homo sapiens]; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile: PF01167: Tub family; contains Pfam
PF00646: F-box domain
Length = 455
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 220 VWPSVLHVVACAYACK 173
VWP+ HVVACA C+
Sbjct: 78 VWPARRHVVACASVCR 93
>At5g10080.1 68418.m01168 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 306 RNHLAFGGHVRRTVAQPKLGLKGVEVGLQFGLLFYTWWLVLTP 178
R + G V+ V P G K + G FG L YTW + TP
Sbjct: 69 RQRMNLGAKVQSLV--PSEGSKTISSGNDFGWLHYTWIDIGTP 109
>At2g06005.2 68415.m00656 expressed protein
Length = 342
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 1 RICKVLKVNQENERLMEEYERLASDLLDWIRR 96
R +V +VN N + +EE ERL + L +W R
Sbjct: 272 RDAEVQRVNSTNNQYIEENERLRAILSEWSMR 303
>At2g06005.1 68415.m00655 expressed protein
Length = 355
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 1 RICKVLKVNQENERLMEEYERLASDLLDWIRR 96
R +V +VN N + +EE ERL + L +W R
Sbjct: 285 RDAEVQRVNSTNNQYIEENERLRAILSEWSMR 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,498
Number of Sequences: 28952
Number of extensions: 332807
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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