Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30778
         (349 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P36188 Cluster: Troponin I; n=50; cellular organisms|Re...    46   2e-04
UniRef50_Q9XUN9 Cluster: Troponin I 3; n=6; Caenorhabditis|Rep: ...    36   0.25 
UniRef50_Q53MG2 Cluster: Putative uncharacterized protein; n=1; ...    31   4.1  

>UniRef50_P36188 Cluster: Troponin I; n=50; cellular organisms|Rep:
           Troponin I - Drosophila melanogaster (Fruit fly)
          Length = 269

 Score = 46.0 bits (104), Expect = 2e-04
 Identities = 27/74 (36%), Positives = 29/74 (39%)
 Frame = +3

Query: 126 IDRKRAEVRKRMEEACXXXXXXXGFMTPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 305
           I+RKRAEVRKRMEEA        GFMTPE                               
Sbjct: 75  IERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLLLRKKAAEELKKEQERKAAERRRI 134

Query: 306 XXXXCGKPRNIDDA 347
               CG PRN+ DA
Sbjct: 135 IEERCGSPRNLSDA 148


>UniRef50_Q9XUN9 Cluster: Troponin I 3; n=6; Caenorhabditis|Rep:
           Troponin I 3 - Caenorhabditis elegans
          Length = 260

 Score = 35.5 bits (78), Expect = 0.25
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +3

Query: 135 KRAEVRKRMEEACXXXXXXXGFMTPE 212
           K+AEVRKRMEEA        GF+TPE
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTPE 56


>UniRef50_Q53MG2 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 237

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 208 LRGIRSSG-CCCVRKPSIS*RRSRNVELLNGGASSRRGAVNLGTLTTP 348
           +RG R  G C  V+  +I  RRSR V++L G A++R  +V+  +   P
Sbjct: 50  VRGERGKGGCISVKARAIDTRRSRFVDVLVGSATARPASVSSASAPRP 97


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,921,358
Number of Sequences: 1657284
Number of extensions: 2834231
Number of successful extensions: 5402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5401
length of database: 575,637,011
effective HSP length: 89
effective length of database: 428,138,735
effective search space used: 11131607110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)