Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30778
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0147 - 10758318-10758330,10758786-10759291                       31   0.19 
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472...    26   9.3  
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200...    26   9.3  

>11_03_0147 - 10758318-10758330,10758786-10759291
          Length = 172

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 208 LRGIRSSG-CCCVRKPSIS*RRSRNVELLNGGASSRRGAVNLGTLTTP 348
           +RG R  G C  V+  +I  RRSR V++L G A++R  +V+  +   P
Sbjct: 8   VRGERGKGGCISVKARAIDTRRSRFVDVLVGSATARPASVSSASAPRP 55


>06_03_1312 -
           29246828-29246899,29247011-29247058,29247138-29247215,
           29247304-29247360,29247597-29247662,29247750-29247839,
           29248136-29248213,29248318-29248422,29248534-29248669,
           29248778-29248853,29248973-29249177,29249289-29249501,
           29250073-29250795
          Length = 648

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 126 FRPVWPSSPPXDAFFHH 76
           FRPV P  PP D F  H
Sbjct: 459 FRPVNPQDPPLDPFLVH 475


>02_01_0299 +
           2001938-2002510,2002821-2003033,2003129-2003333,
           2003485-2003560,2003665-2003800,2003905-2004009,
           2004095-2004172,2004264-2004353,2004441-2004506,
           2004836-2004892,2004996-2005073,2005165-2005212,
           2005330-2005401
          Length = 598

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 126 FRPVWPSSPPXDAFFHH 76
           FRPV P  PP D F  H
Sbjct: 409 FRPVNPQDPPLDPFLVH 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,289,077
Number of Sequences: 37544
Number of extensions: 94028
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)