Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30778
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical pr...    36   0.011
AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3 ...    36   0.011
AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i pr...    35   0.018
AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4 ...    35   0.018
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    33   0.042
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    33   0.042
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    30   0.40 
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    30   0.40 

>Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical
           protein T20B3.2 protein.
          Length = 260

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +3

Query: 135 KRAEVRKRMEEACXXXXXXXGFMTPE 212
           K+AEVRKRMEEA        GF+TPE
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTPE 56


>AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3
           protein.
          Length = 260

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +3

Query: 135 KRAEVRKRMEEACXXXXXXXGFMTPE 212
           K+AEVRKRMEEA        GF+TPE
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTPE 56


>AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i
           protein 4 protein.
          Length = 194

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           +RK+ EVRKR+EEA        GF+TPE
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTPE 43


>AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4
           protein.
          Length = 194

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           +RK+ EVRKR+EEA        GF+TPE
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTPE 43


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           + K+AEVRKR+EEA        GF+TPE
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTPE 44


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 33.5 bits (73), Expect = 0.042
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           + K+AEVRKR+EEA        GF+TPE
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTPE 44


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           + K+AEVRKR+EEA        GF+TPE
Sbjct: 30  EAKKAEVRKRLEEA-GQKKQKKGFLTPE 56


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 129 DRKRAEVRKRMEEACXXXXXXXGFMTPE 212
           + K+AEVRKR+EEA        GF+TPE
Sbjct: 30  EAKKAEVRKRLEEA-GQKKQKKGFLTPE 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,594,942
Number of Sequences: 27780
Number of extensions: 65601
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)