Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30778
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    20   9.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    20   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 25   LLILAVGHPKPTQQQWRMMKKSV 93
            ++   V H K  QQ+W  +  +V
Sbjct: 1491 MIYFVVEHKKKNQQEWNQVSNNV 1513


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 268 RSRNVELLNGGASSRRGAVNLGTLTT 345
           +  NVE L GG S+   +  L T  T
Sbjct: 11  KKNNVENLKGGGSTTPASPTLSTPPT 36


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 104 EEGQTGRNR 130
           EEGQ+GR+R
Sbjct: 24  EEGQSGRSR 32


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 104 EEGQTGRNR 130
           EEGQ+GR+R
Sbjct: 24  EEGQSGRSR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,868
Number of Sequences: 438
Number of extensions: 782
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)