Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30776
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.2  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    22   5.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   6.8  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.8  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.0  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 152 PGPTESYLRHHPNPAMRAPP 211
           P  T  Y R+HP P    PP
Sbjct: 167 PVYTHHYARYHPYPNFGVPP 186


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 281 EEAPKVLHKQFNSPINL 331
           ++APK+++ ++NS +N+
Sbjct: 13  QKAPKIVNSKYNSILNI 29


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = +2

Query: 281 EEAPKVLHKQFNSPINL 331
           ++APK+++ ++NS +N+
Sbjct: 13  QKAPKIVNSKYNSILNI 29


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 7   PTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPY 105
           PTSV   L P+  P     P  P    +++ PY
Sbjct: 315 PTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPY 347


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
 Frame = +2

Query: 113 LLSCSRXAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAP 292
           LLSC     + R+     S+      P  RAP       + ++Q+  +   QR+   + P
Sbjct: 18  LLSCKDFDTLYRDCTTASSW---PGRPPKRAPVGLSLAASHLQQQQLKK--QRLDNGDYP 72

Query: 293 -KVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQ 427
            +  H     P+++   ++++   R + SPL  NG+   PH+   Q
Sbjct: 73  YENGHMGAEFPLDIMMRRDMS---RLEKSPLLANGYNHSPHLSHMQ 115


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 244 KGGRVGAAASG 276
           KGG  GAAASG
Sbjct: 119 KGGGAGAAASG 129


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 46  PNGYQDPKHPEEEVVSNWP 102
           PN    P  PEEE  S  P
Sbjct: 39  PNSAASPAPPEEEAASPTP 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,382
Number of Sequences: 336
Number of extensions: 4074
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)