Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30776
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    31   0.20 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     31   0.26 
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    28   1.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   3.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.9  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   9.9  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 14/65 (21%), Positives = 33/65 (50%)
 Frame = +2

Query: 152 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQFNSPINL 331
           P P ++   + PNP+   P + + +D   K K+  + L++ +G+   ++  +    P  +
Sbjct: 607 PAPLQNVYLYSPNPSALPPSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD-TPPEEV 665

Query: 332 YSEQN 346
           +SE +
Sbjct: 666 FSESD 670


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 312 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALML 491
           S   S+ T +  L  L+ S+L   QL  I     L RGK          S    +D L+L
Sbjct: 428 SDFLSVMTIHIHLLYLASSRLYNWQLRVIYSLLQLFRGKKRNVLRNRIDSYEYDLDQLLL 487

Query: 492 LSIYYAIFRF-LQTIYLFHAKLSVS 563
            +I + +  F L TIY+F+A  +++
Sbjct: 488 GTILFTVLIFFLPTIYVFYAAFALT 512


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 240 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRN 341
           + RW  RCC E    R L C  S  T QS    N
Sbjct: 342 SSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 173 LRHHPNPAMRAPPNHDY-RDTLMKQKVAESVLQRVVGEEAPKVLHKQ 310
           L  HP+  ++   N+    + LMKQK+ E     V+ +EA ++L  +
Sbjct: 476 LNMHPHDELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDE 522


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 255  SRCCSEWLAKRHL 293
            SRCC+ WL+  HL
Sbjct: 2269 SRCCTMWLSNSHL 2281


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 34  PNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGS*GPKGAWPHRELPASSPQP 192
           P  FP G   P +P        P +  P+++PGS    G      +PA    P
Sbjct: 517 PTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPGSVPSAGPAEAEAVPAVPGMP 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,105
Number of Sequences: 5004
Number of extensions: 65710
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)