Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30776
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518...    31   0.85 
02_04_0293 + 21644415-21644533,21644686-21645118                       29   4.5  
03_05_0723 - 27143559-27143648,27144020-27144192,27144284-271443...    29   6.0  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   7.9  
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    28   7.9  
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141...    28   7.9  

>05_01_0578 +
           5180538-5181385,5182480-5182595,5183397-5183605,
           5184024-5184143,5184247-5184375,5184466-5184591,
           5185550-5185667,5186471-5186680,5186788-5187100,
           5187467-5187560,5187760-5187868,5188322-5188593,
           5188684-5188811,5188977-5189211,5189794-5189982,
           5190069-5190349,5190431-5190698,5190719-5190961,
           5191598-5191680,5192484-5192493
          Length = 1366

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 272 VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTN 391
           V G++ PK L+  F     L + +NI  S++   SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785


>02_04_0293 + 21644415-21644533,21644686-21645118
          Length = 183

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 292 RCLFANHSLQHRLCHLLFHKGITVVVVRRCPHC 194
           RC   +H LQHR C  L+ +   V   RRC  C
Sbjct: 29  RCGHCHHRLQHRYCSELYPR---VAAYRRCNWC 58


>03_05_0723 -
           27143559-27143648,27144020-27144192,27144284-27144364,
           27144556-27144609,27146556-27146574
          Length = 138

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 125 SRXAKVRREPGPTESYLRHHPNPAMRAPP 211
           +R +  R  P P  + +R+ P PA +APP
Sbjct: 2   ARRSSARSRPAPRAAPVRNPPQPARQAPP 30


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +2

Query: 152 PGPTESYLRH-HPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-FNSPI 325
           P P  +Y+ H  PNP + + P            V  S    + G   P   + Q FN P 
Sbjct: 136 PNPQPAYMSHPKPNPHVFSSP--------CSPVVFNSPSNHLAGSTTPTPNNLQVFNGPR 187

Query: 326 NLYSEQNIANSIRQQTSPLPTN 391
           N +   + +N +   T+P P N
Sbjct: 188 NPHVSNSPSNHLAGSTTPTPNN 209


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +2

Query: 548 QAICVFLRA*TRRRSLAEDLEPAPQTR*NNEC 643
           +A C  LR  TRR SLA D  PAP    NN C
Sbjct: 275 EAECRKLRHLTRRTSLANDSRPAP----NNAC 302


>02_04_0435 +
           22912993-22913456,22913847-22914012,22914096-22914146,
           22914353-22914578,22915275-22915963,22916055-22916408
          Length = 649

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 149 EPGPTESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 250
           E G  E  +R H  PA RAP   D YR  ++ +KV
Sbjct: 190 EMGIEEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,348,441
Number of Sequences: 37544
Number of extensions: 460537
Number of successful extensions: 1312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)