Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30776
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    31   1.2  
At3g44200.1 68416.m04739 protein kinase family protein contains ...    31   1.2  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    31   1.2  
At3g03950.2 68416.m00414 expressed protein contains Pfam profile...    28   6.6  
At3g03950.1 68416.m00413 expressed protein contains Pfam profile...    28   6.6  
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr...    28   6.6  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    28   8.7  

>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
            helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/69 (28%), Positives = 27/69 (39%)
 Frame = +1

Query: 4    IPTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGS*GPKGAWPHRELPASS 183
            +P+       P   P GY  P+ P        P  + P  +P   GP GA PH   P + 
Sbjct: 980  LPSGPPNGARPGLHPAGYPIPRVPLSPFPGGPP--SQPYAIPTR-GPVGAVPHAPQPGNH 1036

Query: 184  PQPSNEGTS 210
               +  GTS
Sbjct: 1037 GFGAGRGTS 1045


>At3g44200.1 68416.m04739 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 941

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 287 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 454
           AP  LH + +  +N +S+     S+  Q S L  N  +  PH V   V +  RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +3

Query: 417  SRGKSFTRNATMQQSTHILIDALMLLSIYYAIFRFLQTIYLFHAK 551
            S+ ++  ++A+M++   ++ D L LLSIYY++ R  Q + L   K
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSVCRPRQEVVLSELK 2374


>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 424

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 236 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 364
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259


>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 425

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 236 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 364
           MKQ V+   LQR  GE  P+   K     I  YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260


>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 654

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 249 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 359
           ++  C  +WL   HL C  +  TL S I T N  L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 43  FPNGYQDPKHPEEEVVSNWPYRTTPLVLPGS*GPKGAWPHRELPASSPQP 192
           FP+GY    +P     S   Y  TP V P      G+  + +LP + P P
Sbjct: 407 FPSGYSPESYPYTGPPSQ--YGNTPSVKPTHQSGSGSGAYPQLPMARPLP 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,307
Number of Sequences: 28952
Number of extensions: 350610
Number of successful extensions: 971
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)