Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30774
(816 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.16
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 31 1.5
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_58030| Best HMM Match : cIII (HMM E-Value=7.7) 29 6.0
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25) 29 6.0
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8) 28 7.9
>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 881
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 PTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHH 183
P T P+ P + P HP S+ PY T L G + REP P S+ H
Sbjct: 474 PHHATSYNAPSGMPTHREPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQ 531
Query: 184 P 186
P
Sbjct: 532 P 532
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 58 QDPKHPEEEVVSNWPYRTTPL-VLPGAKVRREPGPTESYLRHHP 186
+ P HP S+ PY T L G + REP P S+ H P
Sbjct: 520 EPPPHPS--FASHQPYHVTSCDALSGMQTHREPPPHPSFASHQP 561
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 311 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 448
ST +S T RT+ + S ++ R+C++ T GR+ RGK +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 297 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPHC 193
H C + +LQ+R LCH L HK V ++ C HC
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSHC 362
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +2
Query: 239 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS 418
N W S CS LA +N + ++ RNR +T +G+ +A L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283
Query: 419 RGKSFTRNATMQQSTHILI 475
RN T + HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302
>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 76 EEEVVSNWPYRTTPLVLPGAKVRRE---PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQK 246
++E++ + + P A E PG ++ R P P P N + +L +K
Sbjct: 290 KQEILESQEFAQAPATPRSATTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQHEK 349
Query: 247 VAESV-LQRVVGEEAPKVLHKQFNSPINL 330
V E++ ++R+ EE K K N L
Sbjct: 350 VVETLEIRRMAVEEKRKKRMKYENGETGL 378
>SB_58030| Best HMM Match : cIII (HMM E-Value=7.7)
Length = 167
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = -1
Query: 213 VRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFFFRMFRILVSVREEVG 34
V + P G+ + C A +P +++ H R +P+ F+ +I ++V
Sbjct: 63 VAKLPVRMFGIRYEEATCAAHVPCTINNSPHSRLNK-QPIPSRFYPVFDKIGLTVAGYQP 121
Query: 33 VERHCYTCR 7
R CY C+
Sbjct: 122 GTRWCYRCK 130
>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
Length = 526
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 269 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 379
EWL +H R C S Q+ T+NRT+ T S ++RL
Sbjct: 51 EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 151 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 327
PG ++ R P P P N + +L +KV E++ ++R+ EE K K N
Sbjct: 176 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 235
Query: 328 L 330
L
Sbjct: 236 L 236
>SB_39682| Best HMM Match : Transposase_25 (HMM E-Value=4.8)
Length = 201
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 151 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVGEEAPKVLHKQFNSPIN 327
PG ++ R P P P N + +L +KV E++ ++R+ EE K K N
Sbjct: 21 PGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAVEEKRKKRMKYENGETG 80
Query: 328 L 330
L
Sbjct: 81 L 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,029,294
Number of Sequences: 59808
Number of extensions: 531025
Number of successful extensions: 1545
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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