Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30770
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    27   4.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   5.3  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   5.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   9.2  

>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 6   SKIFERRVESFVLMSKVSKFLKCEIPLPESPTRNQ*NSFVVAILKINTTKYH*VS*RMSD 185
           S++FE  +ESF L+S     L  E+PL     RN  +  ++A  +I  T Y  +  ++ +
Sbjct: 433 SQVFEEDLESFPLLSNC---LLEELPLFLEMARNVTDECILAFAQIQATFYDTIQ-KVLE 488

Query: 186 YVKIKFRL 209
            V  KF L
Sbjct: 489 PVVAKFNL 496


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 513 RSGKSKTKTVVECLVFMLITCYVWSMFAAELYYDIR 406
           RSG S  +  +E  V+M    ++WS+F  +   D R
Sbjct: 198 RSGDSVFEDEIELSVWMQYCSFLWSVFGVQCLNDYR 233


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 479 NVSCSC*SHVTCGRCSQQNSTTTYGT*KLPEC 384
           N+SC+   H+ C  C      TT  T K P C
Sbjct: 215 NLSCTPCGHIFCNFCILSALGTTAATQKCPVC 246


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 543 KIDVYQKKCAY*KKCFDKPSTYFSPNTLL 629
           K++ ++K+C+Y +  +DKP  +   N+ L
Sbjct: 80  KLEEFKKRCSYYRGSYDKPEDFEGLNSHL 108


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 38  RFNVKSIKIPKM*NPSARIPYSKSVEFICRCHTQNKHNKIPLS 166
           R ++  +KI K   P+ R P   S  F       N HN+ PL+
Sbjct: 46  RVSLPPLKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQSPLN 88



 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 492 KTVVECLVFMLITCYVWSMFAAELYYDIRDLEIARMSSSSIDANGFIC 349
           KT+ + L  +L + Y W++ AA+L    R       S +   + GF+C
Sbjct: 262 KTLFQFL--LLFSAYAWTVLAAKLATVARGSPSREASLAQAVSEGFVC 307


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 424 TLLRHTGLRNCQNVLLLYRCQWIYMSKTIWIPIP 323
           TL + TGL N Q+ + LYR    Y      IPIP
Sbjct: 158 TLKKSTGLTNIQSEIFLYR----YGKNCFDIPIP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,923
Number of Sequences: 5004
Number of extensions: 50838
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)