Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30770
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   29   4.2  
SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)                      28   7.4  

>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -3

Query: 590 KTFFLIRTFFLIYIDFYHKLQNLVNIVAVKAKQKQLLNVS 471
           K  +L++ FFL+ + FY ++ NL +  +V   +K +LN S
Sbjct: 26  KASYLLKIFFLVIVLFYKEV-NLADAESVDLGEKAVLNCS 64


>SB_19405| Best HMM Match : DMP1 (HMM E-Value=3.8)
          Length = 551

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 406 PYVVVEFCCEHRPHVTCD*HEH 471
           PY+  +  CEHRPH+  D +EH
Sbjct: 103 PYLASD-SCEHRPHLARDPYEH 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,838,362
Number of Sequences: 59808
Number of extensions: 341762
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)