Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30770
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine rece...    33   0.23 
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein33 protein.
          Length = 294

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -2

Query: 660 IILFSAGLK*LKEYWVKNTLTVCQNIFFNTHIFFDIHRFLS*ITEFS-KHRSGKSKTK-- 490
           +I+F++ L     +W    L VC  I  +TH    ++RF++    FS K+      TK  
Sbjct: 64  MIIFASQLMIYCSHWAGYVLIVCYEISIHTHFLSSVNRFIAVFFPFSYKNIFSPCATKIY 123

Query: 489 -TVVECLVFMLITCYVWSMFAAELYY 415
            T +    F ++T  ++  F   L Y
Sbjct: 124 ITAIAIFSFTMMTTVIFG-FGCRLEY 148


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 470 CSC*SHVTCGRCSQQNSTTTYGT*KLPEC 384
           CSC  H  CG C ++ S+   G  K PEC
Sbjct: 115 CSC-LHTYCGACIREISSRHNGEMKCPEC 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,300
Number of Sequences: 27780
Number of extensions: 288747
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)