Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30770
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 412 HTGLRNCQNVLLLYRCQWIYMSKTIWIP 329
           +TG  +C  V LL++ ++ Y    I+IP
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIP 251


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 412 HTGLRNCQNVLLLYRCQWIYMSKTIWIP 329
           +TG  +C  V LL++ ++ Y    I+IP
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIP 251


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 780 LNSKFDXTRTIKEIVCTCSHRSDLNTKSVNNNSH 679
           +NSK    R +KE+    ++R+ +  K + +N H
Sbjct: 23  INSKKTIMRILKEVCVLQANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 780 LNSKFDXTRTIKEIVCTCSHRSDLNTKSVNNNSH 679
           +NSK    R +KE+    ++R+ +  K + +N H
Sbjct: 6   INSKKTIMRILKEVCVLQANRACILIKDLFDNVH 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,951
Number of Sequences: 438
Number of extensions: 3434
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)