Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30688
         (356 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    29   0.014
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.13 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   0.94 
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   1.6  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   1.6  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   1.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   1.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   1.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   2.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   6.6  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    20   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 29.1 bits (62), Expect = 0.014
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +3

Query: 45  NGTCVSIDECHRELCPVNEVYSSCRQP--NCNSDKCEYKYRSQSCPSDEPCEVGCVCKRG 218
           NGTC  I   HR  C      S C+     C+S  C+      +C  D      C C +G
Sbjct: 158 NGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQ---NGGTC-LDLIGSYSCKCPKG 213

Query: 219 FRRADNGTCVDERDCESQLC 278
           F+  +    VD  DC+   C
Sbjct: 214 FQGQNCELNVD--DCKPNPC 231



 Score = 22.6 bits (46), Expect = 1.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 69  ECHRELCPVNEVYSSCRQPNCNSDKCEY 152
           +C   L P N +Y +  Q +  +  C+Y
Sbjct: 558 DCEESLQPCNPIYDAYCQKHYANGLCDY 585



 Score = 22.2 bits (45), Expect = 1.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 285 LLNKAGIHNLFHRHRCHC 232
           L N     ++ + HRCHC
Sbjct: 155 LCNNGTCEDIGNSHRCHC 172


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.8 bits (54), Expect = 0.13
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -3

Query: 246 HRCHCQPYEILFYKHNRLR--RVRPRDTTVTCI 154
           HRC CQP     Y H  +   +V P +   TC+
Sbjct: 52  HRCQCQPGFTGKYCHENINDCKVNPCENGGTCV 84


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.0 bits (47), Expect = 0.94
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60  SIDECHRELCP-VNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGC 203
           S +E  +  CP VNE  ++      + D C+Y Y       D P   GC
Sbjct: 163 SSEEVFQFECPKVNETVAATHPRYADPDDCQYFY--VCINGDTPRRSGC 209


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 349 PPRSEHFSXRQTAWMQLKYCSFTEQSWDSQSLSS 248
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 349 PPRSEHFSXRQTAWMQLKYCSFTEQSWDSQSLSS 248
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 319 QTAWMQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHL 140
           +T W      S +E   D ++L       ++L N      P S   +EGH   + +YS L
Sbjct: 5   ETLWKMKDPMSASETVQDHRNLLDWSK--TSLDNATEHKLPISMRFNEGHQLSIIVYSIL 62


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -2

Query: 319 QTAWMQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHL 140
           +T W      S +E   D ++L       ++L N      P S   +EGH   + +YS L
Sbjct: 5   ETLWKMKDPMSASETVQDHRNLLDWSK--TSLDNATEHKLPISMRFNEGHQLSIIVYSIL 62


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 349 PPRSEHFSXRQTAWMQLKYCSFTEQSWDSQSLSS 248
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 349 PPRSEHFSXRQTAWMQLKYCSFTEQSWDSQSLSS 248
           PP  + F        QL+Y     Q+++S  LS+
Sbjct: 44  PPGGDFFGNHHIQQQQLQYGYHNHQNYNSNVLSN 77


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 312 LGCNLNTVHLLNKAGIHNLFHRHR 241
           L C L    LL  +G   LF  HR
Sbjct: 232 LSCYLERTELLRSSGETRLFLTHR 255


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = -2

Query: 157 YLYSHLSELQLGCRQLEYTSFTGHSSLWHSSIDTHVP 47
           ++ SH +  +  CR   Y +   HS   H     H P
Sbjct: 277 HMKSHSNVYRYSCRDCSYATKYCHSLKIHLRRYGHTP 313


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 45  NGTCVSIDECHRE 83
           +G C S D CH +
Sbjct: 107 DGICCSQDSCHAD 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,047
Number of Sequences: 336
Number of extensions: 1966
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7193380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)