Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30688
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 29 0.28
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 1.1
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 2.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 24 6.1
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 24 6.1
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 24 6.1
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 6.1
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 24 8.0
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 24 8.0
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.7 bits (61), Expect = 0.28
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 190 QGSSEGHDCDLYLYSHLSELQLGCRQLEYTSFTGHSSLWHSSIDTHV 50
+ SE H D Y L+EL+ G Q TSF S L ++T +
Sbjct: 272 RSESEDHVTDSPAYVDLTELEGGFNQFNSTSFQSTSPLGLEIVETEI 318
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 60 SIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRS 164
S+DE H+ PV + PN ++D+ Y Y S
Sbjct: 401 SLDESHQHYVPVLDPAIYAANPNKSADRTYYPYYS 435
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 265 SQSLSSTQVPLS-ALRNPLLQTQPTSQGSSE 176
+QSLSS ++PL ++R+PL Q ++ S+
Sbjct: 736 NQSLSSERIPLDPSMRSPLQQQSSENESKSQ 766
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -3
Query: 348 PPGLNTSRXDKQLGCNLNTVHLLNKAGIHNLFHRHRCHCQPYEILFYKHNRL 193
PP +S G T + ++ +FH+H+ C Y I Y RL
Sbjct: 293 PPNQESSSSASSYGSRTQTPNA-RSCSLNIVFHKHKKVCTYYMIRHYAKRRL 343
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/68 (23%), Positives = 30/68 (44%)
Frame = -2
Query: 283 TEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHLSELQLGCRQLEY 104
+ +S + S S+ + + +NP SQ S+E YS+++ LQ +
Sbjct: 226 SSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQT 285
Query: 103 TSFTGHSS 80
TS +S+
Sbjct: 286 TSENTYST 293
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 94 TGHSSLWHSSIDTHVPFFD-LKKPPS 20
T SS+ +S +DTH P + +PPS
Sbjct: 308 TASSSVTNSPVDTHTPSTPIMSRPPS 333
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 70 NAIGNYVP*TKCTRAVDSPIVILINASTNTGHSRVPRTN 186
N++ + P T ++ SP++ + NA+ G R PR +
Sbjct: 192 NSVNSVKP-TSAEASLFSPLLSMANANPTNGRERDPRAS 229
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 24.2 bits (50), Expect = 6.1
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = -2
Query: 307 MQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYL 152
M +Y +F+ +SLS+T L++ ++ ++ + T+QG + + DLYL
Sbjct: 344 MPHEYPNFSLAPGTPESLSNTYRELNSFKSYAVEIENTAQGHTYEPE-DLYL 394
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 6.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +3
Query: 18 CEGGFLRSKNGTCVSID-----ECHRELCPVNEVYSSCRQP 125
C+ + R K+GTCV + + E C V++ + RQP
Sbjct: 1283 CDYNYRRLKDGTCVLVSGLQPPDTREEQCSVDDAF-EWRQP 1322
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 23.8 bits (49), Expect = 8.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 181 TNPAKSVVFVKEDFVGLTMAPVSMKEIVNPSF 276
TNP S+ + GL A V + + VNP F
Sbjct: 6 TNPKSSLATFSKQLNGLLQAKVVVCKSVNPYF 37
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 23.8 bits (49), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 298 KYCSFTEQSWDSQSLSSTQVPLSALRNP 215
KYCS ++ + S S P AL+NP
Sbjct: 190 KYCSLYDRGYTSLGGVSDTSPNPALKNP 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,933
Number of Sequences: 5004
Number of extensions: 32533
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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