Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30688
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    34   6e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    34   6e-04
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              24   0.62 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   0.82 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   3.3  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    21   5.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    21   5.8  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               20   7.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   7.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 33.9 bits (74), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +3

Query: 78  RELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGCVCKRGFRRADNGTCVDER 257
           R  CP NE++S C    C    C        C   + C  GCVC+ G+ R     CV   
Sbjct: 34  RGKCPSNEIFSRC-DGRCQRF-CPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRS 89

Query: 258 DC 263
            C
Sbjct: 90  KC 91



 Score = 33.1 bits (72), Expect = 0.001
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   PGCVCEGGFLRSKNGTCVSIDEC 74
           PGCVC  G+LR+K   CV   +C
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 33.9 bits (74), Expect = 6e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +3

Query: 78  RELCPVNEVYSSCRQPNCNSDKCEYKYRSQSCPSDEPCEVGCVCKRGFRRADNGTCVDER 257
           R  CP NE++S C    C    C        C   + C  GCVC+ G+ R     CV   
Sbjct: 34  RGKCPSNEIFSRC-DGRCQRF-CPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRS 89

Query: 258 DC 263
            C
Sbjct: 90  KC 91



 Score = 33.1 bits (72), Expect = 0.001
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 6   PGCVCEGGFLRSKNGTCVSIDEC 74
           PGCVC  G+LR+K   CV   +C
Sbjct: 69  PGCVCRLGYLRNKKKVCVPRSKC 91


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 13/45 (28%), Positives = 15/45 (33%)
 Frame = +3

Query: 39  SKNGTCVSIDECHRELCPVNEVYSSCRQPNCNSDKCEYKYRSQSC 173
           S NG              V +  S C+      D CEY YR   C
Sbjct: 90  SLNGMLTFFQRIPAYRAEVQKAISECKGI-AKGDNCEYAYRFNKC 133


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -3

Query: 234 CQPYEILFYKHNRLRR------VRPRDTTVTCICTRIYQNYN 127
           C+P   +     RLRR       RP    +  IC R+Y + N
Sbjct: 5   CEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLN 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 222 EILFYKHNRLRRVRPRDTTVTCICTRI--YQNYNWAVDSSSTLRSR 91
           E+LF  +N +  VRP   T     TR+  Y N    ++ +S L ++
Sbjct: 620 ELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTK 665


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 312 LGCNLNTVHLLNKAGIHNLFHRHRCHCQPYEILFYKHNRLRR 187
           LG   NT+H++       +F  +    + Y+ L   +NRL R
Sbjct: 9   LGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIR 50


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +3

Query: 99  EVYSSCRQPNCNSDKCEYKYRSQSC 173
           E+ + CR      D C+  Y+   C
Sbjct: 107 EIVAVCRNEEYTGDDCQKTYQYVQC 131


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = -2

Query: 337 EHFSXRQTAWMQLKYCSFTEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDL 158
           +H   RQ   +   Y S+    + S +  +T    S  R P        Q ++     DL
Sbjct: 362 QHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTPSPPRGPGGVPTSVIQAATSSVSDDL 421

Query: 157 YL 152
           YL
Sbjct: 422 YL 423


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 100 SFTGHSSLWHSSIDTHVPFFDLKKPPSQTQP 8
           SF+ H S+    I  H  ++D  K  ++T P
Sbjct: 209 SFSEHDSVMLGEISPHHEYYD-SKSSTETPP 238


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/21 (23%), Positives = 11/21 (52%)
 Frame = +3

Query: 243 CVDERDCESQLCSVNEQYLSC 305
           C++    E+  C++  +Y  C
Sbjct: 115 CIENAKGETDECNIGNKYTDC 135


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 5/21 (23%), Positives = 11/21 (52%)
 Frame = +3

Query: 243 CVDERDCESQLCSVNEQYLSC 305
           C++    E+  C++  +Y  C
Sbjct: 115 CIENAKGETDECNIGNKYTDC 135


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 99  EVYSSCRQPNCNSDKCE 149
           ++ S C   N ++DKCE
Sbjct: 113 KMLSECINANKSTDKCE 129


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -3

Query: 351 IPPGLNTSRXDKQLGCNLNTVHLLNKAG 268
           +PPG      +K+  C+++ ++ + + G
Sbjct: 465 VPPGTPIYECNKRCNCDIDCINRVVQRG 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,433
Number of Sequences: 438
Number of extensions: 2290
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)