Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30685
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.20 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.3  
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.4  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   7.6  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 111 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 239
           T  +  GR+ +P    S+K R  +  +RS   S   R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 195 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 365
           S D+   E     RR+  P+    +  SK+ Y  P    E I     +   V +     Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629

Query: 366 GYSPRPIYAHNYPRSL 413
            + PRP    N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645


>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 73

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 486 NHEN*KLVFKLDDPLKLFGLAC 421
           NHEN   +FK+D   K F L+C
Sbjct: 4   NHENPHFLFKIDSYSKTFLLSC 25


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 196 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 291
           ++T+  + GT  +A A  F PN   P  TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,983
Number of Sequences: 5004
Number of extensions: 54802
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)