Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30685
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60930.1 68414.m06858 DNA helicase, putative strong similarit...    30   1.2  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    30   1.6  
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac...    30   1.6  
At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identic...    29   2.8  
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic...    29   2.8  
At5g23910.1 68418.m02808 kinesin motor protein-related                 29   3.7  
At5g55540.1 68418.m06919 expressed protein                             28   4.9  
At1g67170.1 68414.m07641 expressed protein similar to enterophil...    28   4.9  
At5g35190.1 68418.m04170 proline-rich extensin-like family prote...    27   8.6  

>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity to
            DNA Helicase recQl4B [Arabidopsis thaliana] GI:11121451;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00570:
            HRDC domain
          Length = 1024

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 319  LRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQPEKFKGVV--QLKN 465
            +R+P+T+     ++STA P  + +  TTL ++    Q     G++   LKN
Sbjct: 928  MRFPSTIKVSKQSKSTANPAKVPLKQTTLPMAKAAPQDSNLSGILLTALKN 978


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = +3

Query: 240 SVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDY 419
           S  P L    P  K IY+ P       + P   Y     ++   SP P Y ++ P    Y
Sbjct: 131 SSLPPLTYYSPSPKVIYNSPPPPYIYSSPPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPY 190

Query: 420 YRPTRKV*GGRPT*KLTFSF 479
           Y P+ KV    P     +SF
Sbjct: 191 YSPSPKVEYKSPPPPYVYSF 210



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +3

Query: 228 PTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPR 407
           P+  +  P  L   P  K  Y  P       ++P   Y     ++   SP P Y ++ P 
Sbjct: 101 PSVYTFSPPQLYYSPSPKVEYKSPPPPYVYSSLPPLTYYSPSPKVIYNSPPPPYIYSSPP 160

Query: 408 SLDYYRPTRKV 440
              YY P+ KV
Sbjct: 161 PPPYYSPSPKV 171


>At3g54990.1 68416.m06102 AP2 domain-containing transcription
           factor, putative similar to (SP:P47927) Floral homeotic
           protein APETALA2, Arabidopsis thaliana, U12546
          Length = 247

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 56  YDRYLTEYEH-DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 220
           YDR   ++   D D   V + +RHD  K   + + + +  LR  S  FGR  S+ K
Sbjct: 161 YDRAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216


>At3g07740.2 68416.m00935 transcriptional adaptor (ADA2a) identical
           to transcriptional adaptor ADA2a [Arabidopsis thaliana]
           gi|13591698|gb|AAK31319
          Length = 477

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 214
           +N  R   E EHD D + +           DA E  Q L VLR +SKR    + R
Sbjct: 204 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 257


>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
           to transcriptional adaptor ADA2a [Arabidopsis thaliana]
           gi|13591698|gb|AAK31319
          Length = 548

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  FNYDRYLTEYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSR 214
           +N  R   E EHD D + +           DA E  Q L VLR +SKR    + R
Sbjct: 275 YNLKREEFEIEHDNDAEQLLADMEFKDSDTDA-EREQKLQVLRIYSKRLDERKRR 328


>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 280 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 411
           S+ T  L   L+G      +TCL++ R   T R   + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304


>At5g55540.1 68418.m06919 expressed protein
          Length = 1380

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 253  SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 155
            SGKT+ R G  L+  L+S + FRE    R  D  NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093


>At1g67170.1 68414.m07641 expressed protein similar to
           enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
           to Hyaluronan mediated motility receptor (Intracellular
           hyaluronic acid binding protein) (Receptor for
           hyaluronan-mediated motility) (CD168 antigen)
           (Swiss-Prot:O75330) [Homo sapiens]
          Length = 359

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/80 (23%), Positives = 33/80 (41%)
 Frame = +3

Query: 123 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 302
           ++ R E  SK  +  Q   +S    + I A        R  + +  +TY Y K  Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209

Query: 303 AAAERITVPGYRYLPVHREI 362
              E +      Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226


>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = +3

Query: 288 YDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPTRKV 440
           Y  P       + P   Y     E+   SP P++ +N+P    +Y P+ KV
Sbjct: 262 YYSPSPEVSYKSPPPPPYYSPSLEVSYKSPPPLFVYNFPPPPPFYSPSPKV 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,521,013
Number of Sequences: 28952
Number of extensions: 280764
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)