Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30683
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    36   0.006
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    30   0.29 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   0.89 

>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 372 ERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQR 551
           E+  ++K+A L+GY G  Y+GMQ NP  +TI             ++  + ++ +     R
Sbjct: 39  EKKPKRKVACLVGYCGSGYHGMQLNPPSKTIEGDLFDAFVKAGAVSSYNADDPKKVALAR 98

Query: 552 SSRD*QG 572
           ++R  +G
Sbjct: 99  AARTDKG 105


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +3

Query: 390 KMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRSSRD*Q 569
           ++ +LLGYSG  Y+G+Q N  ++TI            Y+   + + A++    R++R  +
Sbjct: 40  RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNID-AEHLCIARAARTDK 98

Query: 570 G 572
           G
Sbjct: 99  G 99


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 445  FRCIP*YSTPEYPSSIAIFFLLILSYGFLISP 350
            ++C   Y   E+P S+ +FF  I+ + F  SP
Sbjct: 1520 WKCYKAYDITEFPDSLKLFFSDIMGWNFFKSP 1551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,953
Number of Sequences: 5004
Number of extensions: 58716
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)