Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30683
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0250 + 27153048-27154453,27154546-27154885 46 2e-05
03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654... 31 0.70
03_05_0709 + 27032817-27033578 31 1.2
07_03_0756 - 21272122-21272784 30 2.1
11_01_0599 - 4777964-4778842 29 2.8
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 28 6.5
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 28 8.6
09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946 28 8.6
06_01_0560 - 3977456-3977527,3978069-3978182,3978264-3978335,397... 28 8.6
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +3
Query: 375 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 554
R KR+K+A+LLGY G Y GMQ+NPG +TI + + D + + R+
Sbjct: 45 RYKRRKVAILLGYCGAGYQGMQKNPGARTIEGDLEEALYRAGAVPEADRAAPRRYDWARA 104
Query: 555 SRD*QG 572
+R +G
Sbjct: 105 ARTDKG 110
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 620 VNVEEINKRLPETIKVFAVKRVTNRFNSKSKCN 718
V + +N +L I+ F RVTN FN+K C+
Sbjct: 128 VFTDRLNAQLAPQIRAFGYVRVTNSFNAKKFCD 160
>03_02_0938 -
12563250-12563681,12564098-12564514,12565333-12565477,
12565574-12565722,12565836-12565948,12566423-12566458,
12566558-12566816
Length = 516
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 369 YERIKRKKMAMLLGYSGVEYYGMQRNPGV---QTIXXXXXXXXXXXXYITQEDFENAQNA 539
+E ++K++ + +GY G EY G+Q+ + TI I + ++ Q
Sbjct: 66 WESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQKV 125
Query: 540 QFQRSSRD*QG 572
++RSSR +G
Sbjct: 126 GWERSSRTDKG 136
>03_05_0709 + 27032817-27033578
Length = 253
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -3
Query: 693 LFVTLLTANTLIVSGNLLFISSTLTSKGSLSETNLFSSGHTLVSPWSYVGTVHSGHFRN 517
LF LL L+ G + + S TS+G L +L G + V T+H+ F N
Sbjct: 4 LFFVLLIPLILLAGGGQVAVESAATSRGKLIMVDLLEYGSGAGTLAMRVDTIHAAGFAN 62
>07_03_0756 - 21272122-21272784
Length = 220
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 318 GVCCTSLIAYSALYRLTYFLHL 253
GVCC LI + AL+++ FLHL
Sbjct: 187 GVCCFHLIDWLALFQVVRFLHL 208
>11_01_0599 - 4777964-4778842
Length = 292
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 505 LHRKISKMPRMHSSNVAPGTDKGVSAAEQVCLT*TTFRSQ 624
LHR +SK+ M + + A + V V T TFRS+
Sbjct: 167 LHRGLSKLAEMEAGDTAAAARRSVGGETDVSSTVATFRSE 206
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 IINQIVCK*FEQNFTKTSC*NRKKYFSHNK-RTLAVRNGS 238
++ IV K E+NF C N + SH+K R L++R+ S
Sbjct: 1183 MLEVIVSKSLEENFASFFCDNGTELVSHDKIRRLSIRSSS 1222
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 27.9 bits (59), Expect = 8.6
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Frame = +3
Query: 138 FVSNLNKTLPRH----PVRTEKNILAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTR 305
F + ++ T PR P+ + ++A T AR ++AD S+D K+++
Sbjct: 79 FTAYVSTTDPRESANVPLEVHELVIARTQARKCRDYQSADALLS----SLDEAGYKIISC 134
Query: 306 YNKRRAHRDWETKPPG----EIKKPYERIKRKKMAMLLGYSGVEYY 431
+ R + + G E+K PY R R + L+G V+ Y
Sbjct: 135 SDDEVLARKYRIRMRGIDAPELKMPYGRESRNALVKLIGGKSVKIY 180
>09_04_0604 + 18899326-18899743,18900507-18900570,18901799-18901946
Length = 209
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 351 LEVWSPNRDVPGVCCTSLIAYSALYRLTYFLHLSLRRQ 238
L +W R P VC + +AY A Y+L+ + LRRQ
Sbjct: 92 LALWQLRRAAPSVCLDAALAY-AFYKLS-VMAADLRRQ 127
>06_01_0560 -
3977456-3977527,3978069-3978182,3978264-3978335,
3978428-3978497,3978608-3978705,3978791-3978992,
3979074-3979141,3979960-3980358
Length = 364
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -3
Query: 339 SPNRDVPGVCCTSLIAYSALYRLTYFLHLSLRRQLPLRTAS 217
+P R G LI+ SA Y LTY LS R LPL TAS
Sbjct: 3 APCRGSRGALPLLLISLSAAY-LTYTALLSSRSLLPLPTAS 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,994
Number of Sequences: 37544
Number of extensions: 336364
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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