Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30683
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical ...    47   1e-05
Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans nephrocystin-...    28   7.8  

>AL021572-2|CAA16518.1|  415|Caenorhabditis elegans Hypothetical
           protein W06H3.2 protein.
          Length = 415

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/69 (40%), Positives = 36/69 (52%)
 Frame = +3

Query: 354 EIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQ 533
           E KKP  R+K+ K AMLLGY G +YYGMQ    + TI            +IT    E   
Sbjct: 24  EPKKP--RVKQAKYAMLLGYQGKKYYGMQLQKDLPTIESKLLEAMETAGWITTAQKEKPF 81

Query: 534 NAQFQRSSR 560
           +  FQR++R
Sbjct: 82  DFFFQRAAR 90


>Z81056-6|CAB02906.1|  398|Caenorhabditis elegans Hypothetical
           protein F09F3.10 protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -2

Query: 370 YGFLISPGGLVSQSRCARRLLY---LVNSLFGTISIDLFSSSFVTSAASITDSKRALVMA 200
           YG LI    L+   RCA +L+Y    V+ LF     DL+ SSF  +A ++++     +  
Sbjct: 332 YGQLIL---LLGNIRCAVKLVYNQTKVSDLFNAYKFDLYISSFFNNALTVSNKFIEKLTT 388

Query: 199 KIF 191
           KI+
Sbjct: 389 KIY 391


>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 626 VEEINKRLPETIKVFAVKRVTNRFNSKSKCN 718
           V+ +N  LP+TI+VFA   V   FN++  CN
Sbjct: 133 VKMLNGVLPKTIRVFAWAPVAQTFNARFDCN 163


>U40959-3|AAA81767.2|  445|Caenorhabditis elegans Hypothetical
           protein B0310.3 protein.
          Length = 445

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 216 RLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYE 374
           ++L  +E  +     EN+   +V +    R N+++  ++ + +PP E  +PYE
Sbjct: 336 QILEKLEETEEKPQVENEKKVVVKHVQSARKNQKKGRKNRKVEPPKEEFEPYE 388


>Z81579-5|CAB04654.3| 1305|Caenorhabditis elegans Hypothetical protein
            R13H4.1 protein.
          Length = 1305

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 156  KTLPRHPVRTEKNILAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDW 335
            KT+ +    +EK ++  T+ R+   ++  DV            PN     Y+ +   R W
Sbjct: 939  KTVNKVTTPSEKQMMRQTTDRIEICLQPGDVLFIPFIYDAFFFPNDAFNMYSTKVVFRRW 998

Query: 336  ETKPP 350
            +TK P
Sbjct: 999  DTKEP 1003


>AY959881-1|AAX56914.1| 1305|Caenorhabditis elegans
            nephrocystin-4-like protein protein.
          Length = 1305

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 156  KTLPRHPVRTEKNILAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDW 335
            KT+ +    +EK ++  T+ R+   ++  DV            PN     Y+ +   R W
Sbjct: 939  KTVNKVTTPSEKQMMRQTTDRIEICLQPGDVLFIPFIYDAFFFPNDAFNMYSTKVVFRRW 998

Query: 336  ETKPP 350
            +TK P
Sbjct: 999  DTKEP 1003


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,691
Number of Sequences: 27780
Number of extensions: 332434
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)