Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30683
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20370.1 68414.m02541 tRNA pseudouridine synthase family prot...    44   1e-04
At1g76120.2 68414.m08840 tRNA pseudouridine synthase family prot...    35   0.047
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot...    35   0.047
At4g14120.1 68417.m02179 expressed protein                             34   0.11 
At2g30320.1 68415.m03690 tRNA pseudouridine synthase family prot...    34   0.11 
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    30   1.4  
At4g27654.1 68417.m03976 expressed protein                             30   1.8  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    29   4.1  
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e...    28   5.5  
At2g27980.1 68415.m03391 expressed protein                             28   5.5  
At5g14120.1 68418.m01652 nodulin family protein similar to nodul...    27   9.5  
At5g11280.1 68418.m01317 expressed protein                             27   9.5  
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim...    27   9.5  

>At1g20370.1 68414.m02541 tRNA pseudouridine synthase family protein
           similar to SP|Q9WU56 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Mus musculus}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 549

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 375 RIKRKKMAMLLGYSGVEYYGMQRNPGVQTIXXXXXXXXXXXXYITQEDFENAQNAQFQRS 554
           + +R+K+A++  + GV Y GMQ+NPG +TI             +   D    +N ++ RS
Sbjct: 54  KYRRRKVAIVFAFCGVGYQGMQKNPGAKTIEGELEEALFHAGAVPDADRNKPRNYEWARS 113

Query: 555 SRD*QG 572
           +R  +G
Sbjct: 114 ARTDKG 119



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 626 VEEINKRLPETIKVFAVKRVTNRFNSKSKCN 718
           VE +N +LP+ I+VF  KRV   F+SK  C+
Sbjct: 139 VERLNSKLPDQIRVFGYKRVAPSFSSKKFCD 169


>At1g76120.2 68414.m08840 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 356

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 387 KKMAMLLGYSGVEYYGMQRNPGVQTI 464
           +K+A++  + GV Y GMQ+NPG +TI
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTI 47


>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
           similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
           4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
           Pfam profile PF01416: tRNA pseudouridine synthase
          Length = 463

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 387 KKMAMLLGYSGVEYYGMQRNPGVQTI 464
           +K+A++  + GV Y GMQ+NPG +TI
Sbjct: 22  QKVAIIFAFCGVGYQGMQKNPGAKTI 47


>At4g14120.1 68417.m02179 expressed protein
          Length = 368

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 144 SNLNKTLPRHPVRTEKNILAITSARLLS-VMEAADVTKDEENK 269
           +NL   + RHP +  KN  +++  R+L  +MEAADVT+D + K
Sbjct: 186 TNLGSKVIRHPEKIFKNPGSVSYRRMLPYLMEAADVTRDGDAK 228


>At2g30320.1 68415.m03690 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase [Schizosaccharomyces
           pombe] GI:6469502; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 510

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 369 YERIKRKKMAMLLGYSGVEYYGMQ---RNPGVQTIXXXXXXXXXXXXYITQEDFENAQNA 539
           +E  ++KK+ + +GY G +Y G+Q    +P ++TI             I   ++ +    
Sbjct: 57  WESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKI 116

Query: 540 QFQRSSRD*QGCVRC*TSLS 599
            + RSSR  +G     TS+S
Sbjct: 117 GWARSSRTDKGVHSLATSIS 136



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 635 INKRLPETIKVFAVKRVTNRFNSKSKC 715
           I+K LPE I+VF+V     RF+ + +C
Sbjct: 159 ISKHLPENIRVFSVLPSNRRFDPRREC 185


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 228 VMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIK 362
           ++EA  + KD+   S++ +  +     ++ + H+ WET+P G+ K
Sbjct: 18  IVEANPLVKDDT--SLETIVRRFQDSMSEAKTHKFWETQPVGQFK 60


>At4g27654.1 68417.m03976 expressed protein
          Length = 67

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 306 TSLIAYSALYRLTYFLHLSLRRQLPLRTAS-VRLLWLKYFFLF*QDVLVKFC 154
           TSL    +LY +    H   R  L + + S +R LW+ +FFLF    L++FC
Sbjct: 3   TSLELVVSLY-IVLLDHHRFRIFLLISSISDIRRLWIVFFFLFFTTFLIEFC 53


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 252 KDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPY 371
           KD  N+SI + P K    +N+    ++ E KP G I+ P+
Sbjct: 264 KDYHNESITM-PTKSFRFFNRAALKQEDEVKPDGTIRNPW 302


>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
           ethylene-regulated nuclear protein (ERT2) identical to
           ethylene-regulated nuclear protein [Arabidopsis
           thaliana] gi|2765442|emb|CAA75349
          Length = 405

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 111 GMSVSLIRLFVSNLNKTLPRHPVRTEKNILAITSARLLS 227
           G   SLI LFV N ++   +   R  KN  A T  R+LS
Sbjct: 35  GFPTSLIDLFVKNRDRLKKQSSKRNNKNNKAQTETRVLS 73


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 373 KGLREKKWLCCWGTPELNITVCNEIL 450
           K L E+KW C  G  E+N T+ N I+
Sbjct: 794 KELPEEKWFCSLGCEEINTTLGNLIV 819


>At5g14120.1 68418.m01652 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 579

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -3

Query: 681 LLTANTLIVSGNLLFISSTLTSKGSLSETNLFSSGHTLVSP---WSYVGTVHSGHFRNLP 511
           L+  + L+ SG+ L +   L   G +S++  + + H LVS    W+++G +  G+F  L 
Sbjct: 366 LIFFSLLLGSGSGLTVIDNL---GQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422

Query: 510 V 508
           V
Sbjct: 423 V 423


>At5g11280.1 68418.m01317 expressed protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 274 IDLFSSSFVTSAASITDSKRALVMAKIFFSVLTGCLG 164
           +D+++ + V  A+++TD +R  V+A  +FSV    +G
Sbjct: 90  LDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVG 126


>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
           similar to similar to PIR|T05180|T05180 S-receptor
           kinase ARK3 precursor - [Arabidopsis thaliana]
          Length = 843

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 424 STPEYPSSIAIFFLLILSYGFLISPGGL 341
           S P Y  S  IF +LIL   F +SP  L
Sbjct: 3   SVPNYHHSFFIFLILILFLAFSVSPNTL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,580,623
Number of Sequences: 28952
Number of extensions: 292316
Number of successful extensions: 911
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)