Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30682
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 32 0.59
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 3.2
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 29 3.2
06_03_0147 + 17236158-17236808 29 3.2
04_04_1633 + 34928139-34928511,34928700-34928774,34929385-349294... 29 3.2
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 29 3.2
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.2
12_01_0598 + 4890006-4890290,4890901-4890987 29 4.2
11_06_0529 + 24687027-24687064,24687150-24687610,24687709-246881... 29 4.2
08_02_0463 + 17450935-17451180 29 4.2
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 29 4.2
06_01_0749 + 5599238-5600128 29 5.5
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 28 7.3
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 157 RVRHESSYRPRCRTVNQFSRHAVGGPVGPTRRVEVTL 47
R R E+S + + +SRHAV PV TR ++V L
Sbjct: 1579 RTRSETSNKLHINSAGYYSRHAVPEPVSVTREIKVPL 1615
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 504 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 629
T P P SS+ A A A + +R PSP+VG FT+ AS
Sbjct: 296 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 338
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 504 TIFPSITSQPRSSLDA-ATSRACTTPVRRPSPTVGHFTRSSAS 629
T P P SS+ A A A + +R PSP+VG FT+ AS
Sbjct: 315 TFSPYSQDNPSSSVVAPARISAKPSALRMPSPSVGFFTQGKAS 357
>06_03_0147 + 17236158-17236808
Length = 216
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 316 SNSRRHCGFDPPGSLCGAARQVLSTTRHHL 405
S+ +RH G PG L A R L T HHL
Sbjct: 43 SHRQRHGGMPSPGDLAAALRGRLLTEDHHL 72
>04_04_1633 +
34928139-34928511,34928700-34928774,34929385-34929483,
34929736-34929908,34929990-34930066,34930182-34930301,
34930385-34930472,34930610-34930716,34930814-34930871
Length = 389
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +3
Query: 198 PWSSVSWTESLTDAA-QHWPSLP 263
PW VSW ES + QH+ SLP
Sbjct: 17 PWDDVSWAESTSSTVLQHYNSLP 39
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 377 WRAAPQSEPGGSKPQCRREFDGSHLRKSWLLRS 279
WR P P P+ RRE DG R+ W RS
Sbjct: 11 WRPVPHEAPPLPLPRLRRE-DGQEKRRRWPFRS 42
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +3
Query: 180 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTS 275
G G+A WSS S + T SLPSMTS
Sbjct: 264 GGGAAEAWSSASASSPPTTTTASRRSLPSMTS 295
>12_01_0598 + 4890006-4890290,4890901-4890987
Length = 123
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 419 RMNMSRWCRVVLRTWR-AAPQSEPGGSKPQCRREFDGSHLR 300
R+++ VL +WR A + PGGS+P E G+ R
Sbjct: 47 RLDVDERMGTVLASWRKTAGRGRPGGSRPAAEAEIQGADPR 87
>11_06_0529 +
24687027-24687064,24687150-24687610,24687709-24688124,
24688688-24688860,24689733-24689868,24689914-24690264,
24691170-24691344,24691761-24691822
Length = 603
Score = 29.1 bits (62), Expect = 4.2
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Frame = +3
Query: 486 ASRIASTIFPSITSQPRSSLD---AATSRACTTPVRRPSPTVGHFTRSS--------ASG 632
A A+ + T+ SSLD A + CT P R+P V RS A
Sbjct: 48 AGTAATAAVATETTSGSSSLDEDDADDDKLCTPPARQPWKGVAEAWRSRTMRRLPSLAPT 107
Query: 633 MT*TCSRFTRRTGSRPPVWPS 695
M+ T RF+ R+G+ P WPS
Sbjct: 108 MSSTLRRFSIRSGAWPQ-WPS 127
>08_02_0463 + 17450935-17451180
Length = 81
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 307 IFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHG-WADPDPHHVMRHIR 155
+F SL + +ID +DG AAS V EDHG WA P V ++
Sbjct: 6 LFLSLALSLSLSLIDLKDGWQTAASPPRRVDRKEDHGHWAAPSEDAVTNDVQ 57
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = -3
Query: 391 WC*GLGAR----HHRASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSD 224
W GLG H + + + V TG SL C + DG+ W +
Sbjct: 323 WTFGLGDNGQLGHGTTATICSPQPVDGLPTGSFLISLDCGLFHTTVVSSDGEVWCWGMER 382
Query: 223 SVQLTEDHGWADPDPHHVMRHIRVR 149
+ L D ++ D +R IRV+
Sbjct: 383 GLGLCPDASFSGVDSGDALRPIRVQ 407
>06_01_0749 + 5599238-5600128
Length = 296
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Frame = -2
Query: 764 LPSSEAPEICGSASKVAV*L---LHSRRPDRRPRACSSRKTRAGSRHP*C*AP---CKVA 603
+ SS P +A++ A LH P + R+ SSR+ AG R P AP
Sbjct: 1 MSSSRRPPARAAATEAAADAALPLHPSSPRSKKRSSSSRRAAAGDRRPAARAPNPSLSPR 60
Query: 602 YGWRRPSYRSSARTR 558
G PS +S R R
Sbjct: 61 GGGGAPSRKSERRRR 75
>12_02_0715 -
22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 551 GNLACVHYSGKKAFSNRRPLYKELSIRDDVN---LLSFYAKNRLAAAGLAV 694
GNL YS R +++ELS RD+V+ +LS YA+N L L +
Sbjct: 80 GNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGL 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,249,508
Number of Sequences: 37544
Number of extensions: 515943
Number of successful extensions: 1770
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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