Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30682
(783 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38821| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 30 1.8
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013) 29 3.2
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_36493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22) 28 9.8
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 9.8
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_38821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/97 (21%), Positives = 36/97 (37%)
Frame = +3
Query: 435 TVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFT 614
TVS MT+ CP + + + T Q + D +SR P+ + +
Sbjct: 2 TVSQMTVKKRRITCPPMKAPLLTRRPQQTTQQKKVHADERSSRKYAIPIAELTTEMAKLL 61
Query: 615 RSSASGMT*TCSRFTRRTGSRPPVWPSRMQQLNCYLG 725
R T + + + P W +++ CYLG
Sbjct: 62 RDVKVFFTKDINLERKGSPISPSTWTKANERILCYLG 98
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = -3
Query: 355 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 182
SP Q+ ++G+ S + E++ G DGRD + W DS + +E W P
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639
Query: 181 PHHVMRHIRVRHESSYRPRCRTVNQFSRHA 92
RH SS P +TV + S +A
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKRPSDNA 669
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 444 AMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSS 623
A+ LT S ++S +++++ P + SL + +C TP R + R+
Sbjct: 606 AVLLTSSSSLRTTSSSSVSTSVQPPRDTSTGRSLGGSADASCRTPRDRSRENGKNHQRTK 665
Query: 624 ASGMT*TCSRFTRRTGSR 677
+SG TCS R SR
Sbjct: 666 SSGKDSTCSTRGSRDTSR 683
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 444 AMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSS 623
A+ LT S ++S +++++ P + SL + +C TP R + R+
Sbjct: 1273 AVLLTSSSSLRTTSSSSVSTSVQPPRDTSTGRSLGGSADASCRTPRDRSRENGKNHQRTK 1332
Query: 624 ASGMT*TCSRFTRRTGSR 677
+SG TCS R SR
Sbjct: 1333 SSGKDSTCSTRGSRDTSR 1350
>SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
Length = 313
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 608 VAYGWRRPSYRSSAR---TRGCRVQ*TSWLTRDRRKD 507
+ Y WR P YR++ R GCR+ ++RDRR D
Sbjct: 276 LVYAWRLPKYRNAFREALCNGCRIV-ELVMSRDRRTD 311
>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 355 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 203
S D +GAN T + S C G Q I+G D A V+DS + +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 209 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 361
+ ++R RRP+L V F + + EDE +RA L HR RS
Sbjct: 90 KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
Frame = -3
Query: 676 REPVLRVKREQVHVI---PDAELLVKWP 602
+EP++ +KRE++HV+ P AE++ K P
Sbjct: 691 QEPMIEIKREEIHVVLAAPKAEIVDKPP 718
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 257 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 427
+ +D FL++ A + ADTAA + A V +K + L T+ S ++ P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717
>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 435 TVSAMTLTLLSFWCPYAASRIASTIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFT 614
+V+A T+T I +T+ + + A S A +T RPSPT+ H +
Sbjct: 714 SVAAATVTSSPNVTTQTMPVITNTVTSTSIINSGTPTSAMASSASSTTEIRPSPTINHMS 773
Query: 615 RSSA 626
+SA
Sbjct: 774 TTSA 777
>SB_36493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 107
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 545 GRGNLACVHYSGKKAFSNRRPLYKELSIRD 634
GRG L CV +K S ++P + L RD
Sbjct: 62 GRGRLLCVTIRHRKPASQKKPAFSRLMKRD 91
>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
Length = 2279
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 738 LRLGLQGSSLTVAFSTARPAAASLF 664
L+LGL+G ++ +TARP A S+F
Sbjct: 1019 LQLGLEGLGISFMDTTARPLAVSVF 1043
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 249 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 332
W L +PK PR+ ++ V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -3
Query: 358 ASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWADP-- 185
A P + + G T ++ + G + + + G+C S ++ L+ W D
Sbjct: 407 AKPAVTAANTGNMDTPVVNDR-GMYSCPKRMQTGPGECNPPSPKEANDLSRVKQWVDQLC 465
Query: 184 DPHHVMRHIRVRHESSYRPRCR 119
H + R +H SYR CR
Sbjct: 466 AAHELETVTRSKHRKSYRHACR 487
>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 249 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 332
W L +PK PR+ ++ V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,423,481
Number of Sequences: 59808
Number of extensions: 535373
Number of successful extensions: 1492
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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