Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30682
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.79 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.79 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 510 FPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRS 620
           FP I+   R  ++    R    P+R P   + H+ R+
Sbjct: 102 FPMISVFSRQDIETIIRRNSRYPLRPPQEVISHYRRT 138


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 420 ANRSRTVSAMTLTLLSFWCPYAASRIASTIF 512
           A  ++ V+ M    L  W PYAA  IA+  F
Sbjct: 107 AKITKMVALMITAFLLAWSPYAALAIAAQYF 137


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 180 GSGSAHPWSSVSWTESLTDAA 242
           G  S+H   S SWT+   DAA
Sbjct: 399 GQSSSHHHGSKSWTQEDMDAA 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,645
Number of Sequences: 438
Number of extensions: 4927
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)