Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30682
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23330.1 68414.m02917 expressed protein                             30   2.0  
At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2...    29   2.6  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   4.6  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    29   4.6  
At5g13470.1 68418.m01550 expressed protein                             28   6.1  
At1g48560.1 68414.m05430 expressed protein                             28   6.1  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   8.0  

>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 164 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 9
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At2g29100.1 68415.m03537 glutamate receptor family protein (GLR2.9)
           plant glutamate receptor family, PMID:11379626
          Length = 940

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 581 KKAFSNRRPLYKELSIRDDVNLLSFYAKNRLAAAGLAVENATVKLL 718
           K+ F    P     S+RDD+N+ + +A + + A   AVE A  K L
Sbjct: 294 KRTFEKENP-----SMRDDLNVFALWAYDSITALAKAVEKANTKSL 334


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 501 STIFPSITSQPRSSLDAATSRACTTPVRRPSPTVGHFTRSSAS 629
           +++ P +   P  S D +    CTT   +PSPT   FT++S S
Sbjct: 32  TSLSPPLIRYPAGSPDFSPGPRCTT---QPSPTFSDFTQASPS 71


>At2g17930.1 68415.m02076 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF02259 FAT domain, PF00454
           Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
           domain
          Length = 3795

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 567 THARLPRPVNFLADS**KERLWMLSATLRRGTKSLAM 457
           THA LPRP  F      ++ +W  S  L+ G   LA+
Sbjct: 450 THAHLPRPQGFKGMR--EDEVWKASGVLKSGVHCLAL 484


>At5g13470.1 68418.m01550 expressed protein
          Length = 159

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 649 EQVHVIPDAELLVKWPTVGEGLLTGVVHAREVAAS 545
           E V  +PDA LL++ PT+ +  +TG  HA  VAA+
Sbjct: 48  ESVEKLPDALLLLESPTLAQ--VTGGDHASVVAAA 80


>At1g48560.1 68414.m05430 expressed protein
          Length = 643

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 522 TSQPRSSLDAATSRACTTPVRRP-SPTVGHFTRS 620
           T  PR+S +++T +AC T VRR      GH ++S
Sbjct: 236 TRSPRTSSNSSTMKACETMVRRAVHEDDGHLSKS 269


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 180 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 317
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,601,410
Number of Sequences: 28952
Number of extensions: 352425
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)