Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30681
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 30 0.19
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 1.0
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 2.4
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 4.2
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 7.3
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 25 7.3
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 7.3
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 9.6
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 24 9.6
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 24 9.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 24 9.6
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 29.9 bits (64), Expect = 0.19
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +1
Query: 208 DLKPKLPAVASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTELIFAPRKKEMNKGFLM 387
D+ LPA+ +P + + + A+ + +I+ E PIP +PR +E +
Sbjct: 226 DIHESLPALQNPPIQSHSETDLYADEELDSILMHHERPPIPE-----SPRVEEFEELLNQ 280
Query: 388 FSQDEGLTMLKDEPED 435
F DE +++ K + D
Sbjct: 281 FEGDEKVSVDKIDAHD 296
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 218 RSCQLSRRRASPSVHPSKHSLTAL*SPSLRRRKNDLYRSRNSYSHRERKK 367
+S ++ + S S+ SLTA PSL RR+ND + S+ R+K
Sbjct: 897 KSIEIDKAIIRNSQSTSRPSLTAS-RPSLSRRRNDYINNVTSWLDERREK 945
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 310 EEERPIPVTELIFAPRKKEMNKGFLMFSQDEGLTMLKDEPEDL 438
E E P PVT+ KK++NK S ++ LK E +++
Sbjct: 24 ESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDEV 66
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 348 EYEFRDRYRSFFLRRNDGDYSAVSECFDGCTEGDARRR 235
EYE R +++F + + GDY+A S+ EG R
Sbjct: 307 EYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQRELR 344
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 7.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 134 IDRVSHHAVSSAKMRCLPHTKCS 202
+DR +HH + PH CS
Sbjct: 257 LDRFAHHKIEDLVYHAYPHGPCS 279
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 169 CTRYRMMRDAIDVLPNKFVWCDPAGLRAIGQADQLIGSRLRPG 41
C R +++ DV+ K VWCD L+ + D+ + PG
Sbjct: 277 CARLPLLKAFKDVIGLKDVWCD--SLQTL-HGDRYVYQNFEPG 316
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 215 NRSCQLSRRRASPSVHPSKHSLTAL*SPSLRRRKNDLYRSRNSYSHRE 358
NRS S P V PS+H ++ + + N+ ++SRN + ++
Sbjct: 15 NRSAS-SAVNVEPKVEPSQHQGSSSVKENAISQPNESFQSRNMFFQKD 61
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 VFAAHQVQHADLKPKLPAVASPG-VSFRAPVE 270
V Q A LKPK+P + +PG RA +E
Sbjct: 400 VDVVEQAISAGLKPKVPFLVTPGSEQIRATIE 431
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 9.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 45 GRSREPIS*SACPIARKPAGSHQTNLFGNTSIASRIMRY 161
GR+ IS S P AR G + N+ S A R++RY
Sbjct: 152 GRTMGIISMSTDPDARDNYGPYLPNVGPKISGADRVLRY 190
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 341 SSVTGIGRSSSGVTMATIAPLASVSTGARKE 249
S +T +S + + P A++STGARK+
Sbjct: 778 SGITTTASNSRDSFITRLPPTAALSTGARKK 808
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Frame = -3
Query: 224 SFGFKSA---CCTWCAANTSSLHSI 159
+FGF + CCTW + +H I
Sbjct: 323 TFGFNDSLISCCTWVSPEHGDIHQI 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,794
Number of Sequences: 5004
Number of extensions: 36295
Number of successful extensions: 111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -