Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30681
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456... 29 2.3
02_03_0265 + 17066253-17066501,17067102-17068121 29 2.3
08_02_1334 - 26224546-26225337 28 3.1
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 28 4.1
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 27 5.4
08_01_0554 - 4851698-4851943,4852041-4852760 27 5.4
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493... 27 5.4
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 27 5.4
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 27 7.2
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856... 27 7.2
04_03_0228 + 13004688-13005044 27 7.2
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733... 27 7.2
02_03_0284 + 17275004-17275675 27 7.2
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 27 9.5
06_01_1175 - 10094144-10094387,10094573-10094730,10094851-100950... 27 9.5
>05_01_0529 -
4561792-4561854,4561954-4562016,4562413-4562471,
4562887-4563988
Length = 428
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 267 DGCTEGDARRRDSWQLRFQIGVLHLVCGKHLIFALD 160
D + + R RD W F GVLHL+ ++++ A+D
Sbjct: 210 DNGWDWEIRIRDEWNSVFFDGVLHLITLEYVVAAVD 245
>02_03_0265 + 17066253-17066501,17067102-17068121
Length = 422
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = -3
Query: 347 NMSSVTGIGRSSSGVTMATI-----APLASVSTGARKETPGDATAGSFGFKSACCTWCAA 183
N +S T SSG T A AP A S+GA++ +PG A A S K+A T A
Sbjct: 223 NGASATAAATCSSGPTKADAIGKIKAPPAK-SSGAKRNSPGGAAASS--SKAAAATATAP 279
Query: 182 NTSSLHS 162
++S S
Sbjct: 280 SSSKASS 286
>08_02_1334 - 26224546-26225337
Length = 263
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 299 MATIAPLASVSTGARKETPGDATAGSFGFKSACCTWCAANTSSLHSIP 156
+A+ + AS S A E +A AG CC C A IP
Sbjct: 182 LASPSAAASASVSAAAEDEAEAEAGKGAAGGGCCCVCMARAKGAAFIP 229
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 271 TLANGAIVAIVTPEEERPIPVTELIFAPRKK-EMNKGFLMFSQDEGLTMLKDEPEDLTHL 447
T A A+ P+PV E P K+ N G+LM S + GL ++ D+ +
Sbjct: 75 TAQEAASAALAATRLPMPVPVVEKAPLPPKRIYRNNGYLMVSCNGGLNQMRAAICDMVVI 134
Query: 448 A 450
A
Sbjct: 135 A 135
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 235 ASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTELIFAPRKKEMNK 375
+SPG ++PV L G + + + ++ +TEL+ + + KE K
Sbjct: 241 SSPGKKSKSPVVKLMKGLLNSFNSESDKSNTLITELVNSKKLKEQKK 287
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 353 GANMSSVTGIGRSSSGVTMATIAPLA-SVSTGA 258
G N+S+V GI +S+ VTM P++ V+ GA
Sbjct: 265 GGNLSTVVGIFAASTAVTMVAAGPVSPPVAFGA 297
>05_05_0081 +
22248963-22249016,22249120-22249165,22249259-22249357,
22250178-22250337,22250858-22251128,22251295-22251486
Length = 273
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 283 GAIVAIVTPEEERPIPVTEL 342
G++ A +TPEE +P PV E+
Sbjct: 15 GSVPAALTPEERKPSPVAEV 34
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 293 SPSLRRRKNDLYRSRNSYSHRERKK*IKAFSCSP 394
SP RRR Y R SYS ER++ + SP
Sbjct: 157 SPYNRRRSYSPYERRRSYSPHERRQSYSPYGRSP 190
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 275 SVSTGARKETPGDATAGSFGFKSACCTWCAANTSSL 168
SV G PGD F + CT+C ++ S+L
Sbjct: 95 SVGEGVEDLAPGDHVVPIFTGECGACTYCESSKSNL 130
>05_07_0043 -
27284814-27285190,27285287-27285488,27285576-27285650,
27285743-27285816,27285909-27285996,27286081-27286203,
27288374-27288580,27288631-27288636
Length = 383
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 217 PKLP-AVASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTELIFAP 354
P+ P + +PG APV ++ G TP+ P+P T + +P
Sbjct: 288 PRKPFSQITPGNISSAPVRPISTGGTEENRTPKTFAPVPTTPMTVSP 334
>04_03_0228 + 13004688-13005044
Length = 118
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 263 GARKETPGDATAGSFGFKSACCT 195
G R+ PGDA G+ G CC+
Sbjct: 88 GGRRSPPGDAGEGTSGGGGGCCS 110
>03_03_0116 -
14572258-14572881,14573026-14573127,14573253-14573345,
14573445-14573591,14573690-14573780,14573873-14573961,
14574061-14574126,14574241-14574762
Length = 577
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 196 VQHADLKPKLPAVASPGVSFRAPVETLANGAIVAIVTPEEERPIPV 333
++ +L P+ A AS F +P NGA E RP P+
Sbjct: 520 LEQVNLSPRSAAAASASSRFSSPQRRSFNGAAAPATPREALRPSPL 565
>02_03_0284 + 17275004-17275675
Length = 223
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 91 ASRPDHTRQTCLATHRSRLASCGIECKD 174
AS P H + C+A S + G+ CKD
Sbjct: 28 ASDPSHLQDLCVADKASTVRVNGVACKD 55
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -3
Query: 353 GANMSSVTGIGRSSSGVTMATIAPLASVSTGARKETPGDATAGSFGFKSACCTWCAANTS 174
G+ S+ +G G SSSG + + +S STG + G + AGSF S+ A + S
Sbjct: 259 GSGSSASSGYGGSSSGSMSGSGSSSSSGSTGM---SYGSSGAGSFSGSSSGSNSNAGSMS 315
Query: 173 SLHS 162
+S
Sbjct: 316 GANS 319
>06_01_1175 -
10094144-10094387,10094573-10094730,10094851-10095055,
10095184-10095473,10095605-10095770,10095872-10095960,
10096060-10096127,10097185-10097473
Length = 502
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 295 AIVTPEEERPIPVTE-LIFAPRKKEMNKGFLMFSQDEGLTMLKDEPEDLTHLA 450
A T RP PV + + P++ N G+LM S + GL ++ D+ +A
Sbjct: 75 ASATLAAARPEPVVDKAVLPPKRIYRNNGYLMVSCNGGLNQMRAAICDMVVIA 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,838,648
Number of Sequences: 37544
Number of extensions: 276605
Number of successful extensions: 1015
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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